@book{Dragoman:04, author = {D. Dragoman and M. Dragoman}, title = {Quantum-{C}lassical Analogies}, publisher = {Springer-Verlag}, year = 2004, jasnote = {Daniela and Mircea Dragoman have written a fine book, on QUantum-Classical analogies which however does not encompass quantum jumps}, } @article{Russel:04, author = {E. Vidal Russel and N. E. Israeloff}, title = {Direct observation of molecular cooperativity near the glass transition}, journal = {Nature}, year = 2000, volume = 408, number = 7, pages = {695--698}, jasnote = {best single article on force microscope observation of single-molecule dielectric relaxation}, } @article{Starkweather:92, author = {H. W. Starkweather and P. Avakian and R. R. Matheson and J. J. Fontanella and M. C. Wintersgill}, title = {Ultralow Temperature Dielectric Relaxations in Polyolefins}, journal = {Macromolecules}, year = 1992, volume = 25, pages = {6871--6875}, jasnote = {best single article on ultra-low temperature relaxation}, } @article{Kamiyoshi:58, author = {K. Kamiyoshi and J. Ripoche}, title = {Etude par absorption hetzienne de l'eau adsorbe sur un gel silica}, journal = {Journal De Physique Et Le Radium}, year = 1958, volume = 19, pages = {943--946}, jasnote = {best single reference on adsorbed water absorption}, } @book{McIntosh:66, author = {R. McIntosh}, title = {Dielectric Behavior of Physically Absorbed Gases}, publisher = {Arnold, London}, year = 1966, jasnote = {see figure 5-7 for water on silica gel, taken from Kamiyoshi and Riposhe}, } @book{Hill:69, author = {N. E. Hill and W. E. Vaughan and A. H. Price and M. Davies}, title = {Dielectric Properties and Molecular Behavior}, publisher = {Van Nostrand Reinhold}, year = 1969, jasnote = {dielectric relaxation -- best literature review see figure 5.76, page 430}, } @book{McIntosh:66, author = {R. McIntosh}, title = {Dielectric Behavior of Physically Absorbed Gases}, publisher = {Arnold, London}, year = 1966, } @book{Bunget:84, author = {I. Bunget and M. Popescu}, title = {Physics of Solid Dielectrics}, publisher = {Elsevier}, year = 1984, jasnote = {Good discussion of Debye equations}, } @book{Kuo:04, author = {K. C. Kuo}, title = {Dielectric Phenomena in Solids}, publisher = {Elsevier}, year = 2004, jasnote = {good working discussion of DeBye equation}, } @book{Hillel, author = {K. C. Cole}, title = {First, You Build a Cloud, and Other Reflections on Physics as a Way of Life}, publisher = {Hartcourt Brace \& Company}, year = 1999, jasnote = {page 208: "The step from not being able to do something at all to being able to do it a little bit is much smaller than the next step---being able to do it well." Yehoshua Bar-Hillel}, } @article{Calderbank:98, title = {The Art of Signaling: Fifty Years of Coding Theory}, author = {A. R. Calderbank}, journal = {{IEEE} Transactions on Information Theory}, volume = 44, number = 6, pages = {2561--2595}, year = 1998, jasnote = {Shannon-Hartley Theorem} } @book{Taub:86, author = {H. Taub and D. L. Schilling}, title = {Principles of Communication Systems}, edition = {2}, publisher = {McGraw-Hill}, year = 1986, jasnote = {Sections 13.7--8 for the Shannon-Hartley Theorem}, } @article{Rugar:04, author = {D. Rugar and R. Budakian and H. J. Mamin and B. W. Chui}, title = {Single spin detection by magnetic resonance force microscopy}, journal = {Nature}, year = 2004, volume = 430, pages = {329--332}, } @article{Sallares:04, author = {R. Sallares and A. Bouwman and C. Anderung}, title = {The Spread of Malaria to Southern Europe in Antiquity: New Approaches to Old Problems}, journal = {Medical History}, year = 2004, volume = 48, pages = {311-328}, jasnote = {P. Falciparum divergence parallells human divergence from chimpanzees, approximately 5--10 million years ago ... an example of parasite-host co-speciation.}, } @unpublished{Matsen:04, author = {F. A. Matsen {III} and R. S. Boorman and J. M. Clark and D. Deffenbaugh and K. M. Gibbs and D. L Korvick and A. G. Norman and S. M. Ott and I. M. Parsons {IV} and J. A. Sidles and R. Titelman}, title = {Early Response of Reamed Bone Articulating Against a Metal Surface: A Canine Model of Shoulder Hemiarthroplasty}, note = {\emph{Journal of Orthopaedic Researc} (to appear)}, } @misc{Pauling:46, author = {L. Pauling}, title = {The possibilities for progress in the fields of biology and biological chemistry}, year = {1946}, note = {Proposal to Warren Weaver, Rockefeller Foundation, June 19, 1946. This file was supplied to us by historian Lily Kay (see \cite{Kay:93}); copy available upon request to J.~Sidles}, } @article{Sali:04, author = {A. Sali and R. Glaeser and T. Earnest and W. Baumeister}, title = {From words to literature in structural proteomics}, journal = {Nature}, year = 2004, volume = 422, pages = {216--225}, } @manual{NIH:04, title = {{NIH} Orientation Program, Appendix 1, Manual 2300--935}, organization = {National Institutes of Health}, } @inCollection{Witten:03, author = {E. Witten}, title = {The past and future of string theory}, booktitle = {The Future of Theoretical Physics and Cosmology}, publisher = {University of Cambridge}, year = 2003, editor = {G. Gibbons and P. SHellard and S. Rankin}, pages = {455--462}, jasnote = {page 457: 'General relativity is a wonderful theory classically. One can well argue that it is our finest classical theory; for example, it is the only classical theory to which we devote conferences.'}, } @article{Mendel:91, author = {J. M. Mendel}, title = {Tutorial on higher-order statistics (spectra) in signal processing and system theory: theoretical results and some applications}, journal = {Proceedings of the {IEEE}}, year = 1991, volume = {79(3)}, pages = {278--305}, } @article{Picinbono:99, author = {B. Picinbono}, title = {Polyspectra of ordered signals}, journal = {{IEEE} Transactions of Information Theory}, year = 1999, volume = {45(7)}, pages = {2239--2252}, } @article{Picinbono:00, author = {B. Picinbono}, title = {Moments and polyspectra of the discrete-time random telegraph signal}, journal = {{IEEE} Transactions of Information Theory}, year = 2000, volume = {46(7)}, pages = {2735--2739}, } @article{Jakeman:99, author = {E. Jakeman and K. D. Ridley}, title = {Statistics of a filtered telegraph signal}, journal = {Journal of Physics A}, volume = 32, year = 2000, pages = {8803-8821}, } @book{Rogers:00, author = {L. C. G. Rogers and D. Williams}, title = {Diffusions, Markov Processes and Martingales, Volume 2: It$\hat{o}$ Calculus}, publisher = {Cambridge Mathematical Library}, year = 2000, chapter = {V}, pages = {144}, jasnote = {Example of Brownian motion on a sphere}, } @article{Peres:04, author = {A. Peres and D. R. Terno}, title = {Quantum information and relativity theory}, journal = {Reviews of Modern Physics}, year = 2004, volume = {76(1)}, pages = {93--123}, jasnote = {Good discussion of POVM literature. But no reference to Choi.}, } @article{Choi:75, author = {M.-D. Choi}, title = {Completely positive maps on linear matrices}, journal = {Linear Algebra and Its Applications}, year = 1975, volume = 10, pages = {285--290}, jasnote = {POVM literature}, } @article{Stinespring:55, author = {W. F. Stinespring}, title = {Positive Functions on {$C^\ast$}-Algebras}, journal = {Proceedings of the American Mathematical Society}, volume = {6(2)}, year = 1955, pages = {211--216}, } @article{Kraus:71, author = {K. Kraus}, title = {General state changes in quantum theory}, journal = {Annals of Physics}, year = 1971, volume = 64, pages = {311--335}, jasnote = {Reference Stinespring}, } @book{Taira:04, author = {K. Taira}, title = {Semigroups, Boundary Value Problems, and Markov Processes}, publisher = {Springer}, year = 2004, jasnote = {too tough for me!}, } @book{Krantz:00, author = {S. G. Krantz}, title = {A Mathematician's Survival Guide: Graduate School and Early Career Development}, publisher = {American Mathematical Society}, year = 2000, jasnote = {Good graduate career guide}, } @book{Alicki:87, author = {R. Alicki and K. Lendi}, title = {Quantum Dynamical Semigroups and Applications}, publisher = {Springer-Verlag}, year = 1987, jasnote = {"singular coupling limit" -- seems to correspond to the batrachian form of the Kraus operators.}, } @article{Palmer:77, author = {P. F. Palmer}, title = {The singular coupling and weak coupling limits}, journal = {Journal of Mathematical Physics}, year = 1977, pages = {527--529}, jasnote = {reflects strong and weak coupling limits in Theorem 3.1}, } @inBook{Wilson:94, author = {E. O. Wilson}, title = {Naturalist}, publisher = {Island Press/Shearwater Books}, year = 1984, pages = {364}, chapter = {Biodiversity, Biophilia}, jasquote = {(JAS idea --you are your own Gaia). Wilson page 5: "This creature was astonishing. It existed outside my previous imagination." Wilson page 9: "I also hoped for more than sharks, what exactly I could not say: something to enchant the rest of my life." Wilson's concluding paragraph: If I could do it all over again, and relive my vision in the twenty-first century, I would be a microbial ecologist. Ten billion bacteria live in a gram of ordinary soil, a mere pinch held between thumb and forefinger. They represent thousands of species, almost none of which are known to science. Into that world I would go with the aid of modern microscopy and molecular analysis. I would cut my way through clonal forests sprawled across grains of sand, travel in an imagined submarine through drops of water proportionally the size of lakes, and track predators and prey in order to discover new life ways and alien food webs. All this, and I need venture no more than ten paces outside my laboratory building. The jaguars, ants, and orchids would still occupy distant forests in all their splendor, but now they would be joined by an even stranger and vastly more comples living world virtually without end. For one more turn around I would keep alive the little boy of Paradise Beach who found wonder in a scyphozoan jellyfish and a barely glimpsed monster of the deep.}, } @book{Davies:76, author = {E. B. Davies}, title = {Quantum Theory of Open Systems}, publisher = {Academic Press}, year = 1976, jasnote = {Good definition of POVMs}, } @book{Breuer:02, author = {H.-P. Breuer and F. Petruccione}, title = {The Theory of Open Quantum Systems}, publisher = {Oxford University Press}, year = 2002, jasnote = {Good relation of Ford, Lewis, O'Connell model to Feynman-Vernon influence functional. But not attributed!}, } @misc{Mattis:04, jassource = {San Diego Union Tribune}, date = {April 4, 2004}, year = 2004, jasquote = {March 23, 2004 Letter to All Hands: We are going back in to the brawl. We will be relieving the magnificent Soldiers fighting under the 82nd Airborne Division, whose hard won successes in the Sunni Triangle have opened opportunities for us to exploit. For the last year, the 82nd Airborne has been operating against the heart of the enemyÕs resistance. ItÕs appropriate that we relieve them. When itÕs time to move a piano, Marines donÕt pick up the piano bench - we move the piano. So this is the right place for Marines in this fight, where we can carry on the legacy of Chesty Puller in the Banana Wars in the same sort of complex environment that he knew in his early years. Shoulder to shoulder with our comrades in the Army, Coalition Forces and maturing Iraqi Security Forces, we are going to destroy the enemy with precise firepower while diminishing the conditions that create adversarial relationships between us and the Iraqi people. This is going to be hard, dangerous work. It is going to require patient, persistent presence. Using our individual initiative, courage, moral judgment and battle skills, we will build on the 82nd AirborneÕs victories. Our country is counting on us even as our enemies watch and calculate, hoping that America does not have warriors strong enough to withstand discomfort and danger. You, my fine young men, are going to prove the enemy wrong - dead wrong. You will demonstrate the same uncompromising spirit that has always caused the enemy to fear AmericaÕs Marines. The enemy will try to manipulate you into hating all Iraqis. Do not allow the enemy that victory. With strong discipline, solid faith, unwavering alertness, and undiminished chivalry to the innocent, we will carry out this mission. Remember, I have added, ÒFirst, do no harmÓ to our passwords of ÒNo Better Friend, No Worse Enemy.Ó Keep your honor clean as we gain information about the enemy from the Iraqi people. Then, armed with that information and working in conjunction with fledgling Iraqi Security Forces, we will move precisely against the enemy elements and crush them without harming the innocent. This is our test-our Guadalcanal, our Chosin Reservoir, our Hue City. Fight with a happy heart and keep faith in your comrades and your unit. We must be under no illusions about the nature of the enemy and the dangers that lie ahead. Stay alert, take it all in stride, remain sturdy, and share your courage with each other and the world. You are going to write history, my fine young Sailors and Marines, so write it well. Semper Fidelis, J. .N. Mattis, Major General, U. S. Marines } } @article{Friedman:04, author = {T. Friedman}, title = {Awakening to a Dream}, journal = {New York Times, March 28,2004}, year = 2004, pages = {WK-13}, jasquote = {"As Stephen P. Cohen says: 'That is the characteristic of our time --- all the imagination is in the hands of the evildoers.'", "I am so hungry for a positive surprise."}, } @book{Sprat:1667, author = {T. Sprat}, title = {The History of the Royal Society of London for the Improving of Natural Knowledge}, publisher = {London}, year = 1667, jasquote = {{The \emph{English} [are] avers from admitting of new \emph{Inventions}, and shorter ways of labor, and from naturalizing New-people: Both which are the fatal mistakes that have made the \emph{Hollanders} exceed us in \emph{Riches} and \emph{Traffic}: They receive all \emph{Projects} and all \emph{People}, and have few or no \emph{Poor}}.}, } @book{Castillo:04, author = {G. F. Torres del Castillo}, title = {3-{D} Spinors, Spin-weighted Functions, and their Applications}, publisher = {Birkhauser}, year = 2003, jasnote = {Good starting companion to Perelomov's Coherent States and their Applications}, } @inbook{Wilson:84, author = {E. O. Wilson}, title = {Biophilia}, publisher = {Harvard University Press}, year = 1984, pages = {113}, chapter = {The Right Place}, jasquote = {Why dilate on the obvious? The answer is that the obvious is usually profoundly significant.}, } @misc{Hoover:04, author = {H. Hoover}, note = {quoted on the wall of the Standford University Herbert Hoover Memorial Library: "To the engineer falls the job of clothing the bare bones of science with life, comfort, and hope."}, } @article{Stenflo:04, author = {L. Stenflo}, journal = {Science}, volume = 427, pages = {777}, year = 2004, type = {Correspondence}, title = {Intelligent pagiarists are the most dangerous}, jasnote = {"Scientists rewrite previous findings in different words \ldots and then during subsequent years forcefully claim that they have discovered new phenomena." See Feynman's Nobel address.}, } @inBook{Crease:03, author = {R. P. Crease}, title = {The Prism and the Pendulum}, chapter = 8, publisher = {Random House}, year = 2003, pages = {156--7}, jasquote = {Recollection of Herbert Goldstein: The young theorist Abraham Pais gave a presentation that was interrupted by Ehrenhaft, then pusing seventy and still championing the monopole cause. He approached the podium demanding to be heard, and was politely escorted out of the room. A young physicist named Herbert Goldstein was sitting next to his mentor, Arnold Siegert. ``Pais's theory is far crazier than Ehrenhaft's,'' Goldstein said to Siegert. ``Why do we call Pais a physicist and Ehrenhaft a nut?'' Siegert thought a moment. ``Because,'' he said, ``Ehrenhaft \emph{believes} his theory.''}, } @article{Budakian:04, author = {R. Budakian and H. J. Mamin and D. Rugar}, title = {Suppression of spin diffusion near a micron-size ferromagnet}, journal = {Physical Review Letters}, year = 2004, volume =92, number = 3, pages = {037205/1-4}, } @article{Mamin:03, author = {H. J. Mamin and R. Budakian and and B. W. Chui and D. Rugar}, title = {Detection and manipulation of statistical polarization in small spin ensembles}, journal = {Physical Review Letters}, year = 2003, number = 20, volume = 91, pages = {207604/1-4}, } @book{Abrahams:03, author = {M. Abrahams}, title = {The Ig Nobel Prizes}, publisher = {Dutton}, year = 2003, pages = {40--41}, jasnote = {In its later years, Lloyd's became a mess, the kind of mess that is awkwardly draped atop a larger mess, a larger mess that is somehow supported by a more massive mess, a massive mess that manages to conceal within itself the type of mess that beggars all description.}, } @article{Nielsen:98, author = {M. A. Nielsen and C. M. Caves and B. Schumacher and H. Barnum}, title = {Information-theoretic approach to quantum error correction and reversible measurement}, journal = {Proceedings of the Royal Society of London, Series A}, year = 1998, volume = 454, number = 1969, pages = {277--304}, jasnote = {Kraus review, references Schumacher: 96}, } @article{Schumacher:96, author = {B. Schumacher}, title = {Sending entanglement through noisy quantum channels}, journal = {Physical Review A}, year = 1996, volume = 54, number = 4, pages = {2614--2628}, jasnote = {Kraus operator review}, } @book{Kraus:83, author = {K. Kraus}, title = {States, Effects, and Operations: Fundamental Notions of Quantum Theory}, publisher = {Springer-Verlag}, year = 1983, jasnote = {good definition of A and B operators}, } @article{Gardiner:92, author = {C. W. Gardiner and A. S. Parkins and P. Zoller}, title = {Wave-function quantum stochastic differential equations and quantum-jump simulation methods}, journal = {Physical Review A}, year = 1992, volume = 46, pages = {4363Ð-4381}, jasnote = {good review of jump formalisms}, } @article{Barchielli:91, author = {A. Barchielli and J. Belavkin}, title = {Measurements continuous in time and a posteriori sets}, journal = {Journal of Physics A}, year = 1991, volume = 24, pages = {1495-1513}, } @article{Madeley:03, author = {C. R. Madeley}, title = {Diagnosing smallpox in possible bioterrorist attack}, journal = {The Lancet}, volume = 361, pages = {97--98}, year = 2003, jasnote = {Accuracy is vital because the consequences of a false positive or a false negative are equally bad. A false positive would cause unnecessary panic and a false negative would increase the danger of a major outbreak. ... Speed is almost as important as accuracy. ... To get a reliable answer, and anything less is virtually worthless, all these methods except electron microscopy require time, mostly measured in days to complete, and all require skill and current experience in doing the procedure. ... If the diagnosis of smallpox can be confirmed in minutes (or, just as importantly , specifically ruled out by confirming an excluding diagnosis such as varicella) deciding what to do with the patient(s), and where, becomes less pressing. Electron microscopy can provide a specific answer either way ("This is definitely a poxvirus, or "Definitely a herpes virus") and the result can be available within 30 minutes from receipt of the specimen.}, } @article{Henkel:99, author = {C. Henkel and S. P\"{o}tting and M. Wilkens}, title = {Loss and heating of particles in small and noisy traps}, journal = {Applied Physics B}, volume = 69, year = 1999, pages = {379--387}, jasnote = {beat us to Sidles:00xxx}, } @article{Sidles:03, author = {J. A. Sidles and J. L. Garbini and W. M. Dougherty and S.-H. Chao}, title = {The Classical and Quantum Theory of Thermal Magnetic Noise, with Applications in Spintronics and Quantum Microscopy}, journal = {Proceedings of the {IEEE}}, volume = 91, number = 5, pages = {799--816}, year = 2003, } @article{Amiet:00, author = { J.-P. Amiet and S. Wieger }, title = {Discrete {Q}- and {P}-symbols for spin s}, journal = {Journal of Optics B}, volume = 2, number = 2, pages = {118--120}, year = 2000, jasnote = {illustrates that P-representation is not unique}, } @article{Braunstein:91, author = {S. L. Braunstein and C. M. Caves and G. J. Milburn}, title = {Interpretation for a positive {P} representation }, journal = {Physical Review A}, year = 1991, volume = 43, number = 3, pages = {1153--9}, jasnote = {very good discussion "In general ... a density oeprator does not have a unique P-representation.} } @book{Rose:57, author = {M. E. Rose}, title = {Elementary Theory of Angular Momentum}, publisher = {John Wiley \& Sons}, year = 1957, } @book{Brink:68, author = {D. M. Brink and G. R. Satchler}, title = {Angular Momentum}, publisher = {Clarendon Press}, year = 1968, } @book{Wigner:59, author = {E. P. Wigner}, title = {Group Theory and its Application to the Quantum Mechanics of Atomic Spectra}, publisher = {Academic Press}, year = 1959, } @book{Wigner:31, author = {E. P. Wigner}, title = {Gruppentheorie}, publisher = {Friedrich Vieweg und Sohn}, year = 1931, pages = {168--180}, } @article{Radcliffe:70, author = {J. M Radcliffe}, title = {Some properties of coherent spin states}, journal = {Journal of Physics A}, year = 1971, volume = 4, pages = {313--323}, jasnote = { "It is straightforward to verify" Q-representation Reprinted in Klauder }, } @article{Perelomov:72, author = {A. M Perelomov}, title = {Coherent states for arbitrary {L}ie group}, journal = {Communications in Mathematical Physics}, year = 1972, volume = 26, pages = {222--236}, jasnote = { Good derivation of the P-representation (non-positive) Reprinted in Klauder }, } @inCollection{Klauder:84, author = {C. Klauder and B. S. Skagerstam}, title = {A Coherent States Primer}, booktitle = {Coherent States}, publisher = {World Scientific Publishing}, year = 1984, pages = {3--74}, jasnote = {A good primer} } @article{Kemph:03, author = {J. G. Kempf and J. A. Marohn}, title = {Nanoscale {F}ourier-transform imaging with magnetic resonance force microscopy}, journal = {Physical Review Letters}, year = 2003, volume = 90, number = 8, pages = {087601-1--087601-4}, } @book{Haba:99, author = {Z. Haba}, title = {Feynman Integral and Random Dynamics in Quantum Physics: A Probabilistic Approach to Quantum Dynamics}, publisher = {Kuwer Academic Publishers}, year = 1999, edition = {Third}, jasnote = {superior discussion of Lindblad equations, etc.}, } @inProceedings{Richardson:82, author = {M. C. Richardson}, title = {Basics of Solid State Lasers}, booktitle = {Lasers: Physics, Systems and Techniques}, year = 1982, institution = {Nato Advanced Study Institute}, note = {see eq.~4.9}, jasnote = {wrong Guoy phase}, } @book{Svelto:89, author = {O. Svelto}, title = {Principles of Lasers}, publisher = {Plenum Press}, year = 1989, edition = {Third}, note = {see eq.~4.129}, jasnote = {wrong Guoy phase}, } @book{Shimoda:86, author = {K. Shimoda}, title = {Introduction to Laser Physics}, publisher = {Springer-Verlag}, year = 1986, edition = {Second}, note = {see eq.~3.122}, jasnote = {wrong Guoy phase}, } @article{Krzywinski:03, author = {M. Krzywinski and Y. Butterfield}, title = {How we sequenced the SARS virus in five days}, journal = {Linux Journal}, year = 2003, pages={44}, month = {November}, } @article{Jones:98, author = {D. Heath Jones and J. Bland-Hawthorn}, title = {Parallelism of a Fabry-Perot Cavity at Micron Spacings}, journal = {Publications of the Astronomical Society of the Pacific}, year = {1998}, volume = {110}, month = {September}, pages = {1059Ð1066}, } @article{Chao:04, author = {S.-H. Chao and W. M. Dougherty and J. L. Garbini and J. A. Sidles}, title = {Nanometer-scale magnetic resonance imaging}, journal = {Review of Scientific Instruments}, year = 2004, volume = 75, number = 5, pages = {1175-1181}, } @misc{Sidles:02, author = {J. A. Sidles}, title = {Path integrals over measurement amplitudes: practical quantum foundations for signal processing and control }, year = 2002, note = {Arxiv preprint server.\protect\\ \url{http://arxiv.org/abs/quant-ph/0211108}}, } @misc{Sidles:04arxiv, author = {J. A. Sidles}, title = {Positive P-Representations of the Thermal Operator from Quantum Control Theory }, year = 2004, note = {Arxiv preprint server.\protect\\ \url{http://arxiv.org/abs/quant-ph/0401165}}, } @phdThesis{Chao:02, author = {S.-H. Chao }, title = {Acquisition and reconstruction of three-dimensional images by magnetic resonance force microscopy}, school = {University of Washington}, year = 2002, } @book{Gottfried:66, author = {K. Gottfried}, title = {Quantum Mechanics}, publisher = {W. A. Benjamin}, year = 1966, jasnote = {see Sections 32--36 for rotation groups}, } @book{Perelomov:86, author = {A. Perelomov}, title = {Generalized Coherent States and Their Applications}, publisher = {Springer-Verlag}, year = 1986, jasnote = {see eq 4.3.43 for a resolution of the identity. Also give Q-representation} } @article{Petroski:03, author = {H. Petrosky}, title = {Failure is Always an Option}, journal = {New York Times, August 29}, year = 2003, pages = {23}, jasnote = {Rather than following from science, engineered things lead it. The steam engine was developed before thermodynamics, and flying machines before aerodynamics. The sciences were invented to explain the accomplishments---and to analyze their shortcomings.}, } @article{Benabid:00, author = {F. Benabid and V. Chickarmane and , A. Di Virgilio and M. Fiorentino and A. Gaddi and P. LaPenna and G. Losurdo and D. Passuello and A. Vicere}, title = {The low frequency facility, {R}{\&}{D} experiment of the {VIRGO} project}, journal = {Journal of Optics B: Quantum and Seomclassical Optics}, year = 2000, volume = 2, number = 2, pages = {172--8}, jasnote = {documents that R1 = infinity, R2 = 3450 m, L = 3000 m}, } @article{Solimeno:91, author = {S. Solimeno and F. Barone and C. De Lisio and L. Di Fiore and L. Milano and G. Russo}, title = {{F}abry-{P}erot resonators with oscillating mirrors}, journal = {Physical Review A}, year = 1991, volume = 43, number = 11, pages = {6227--6240}, } @techReport{Coyne:01, author = {D. Coyne and D. Shoemaker}, title = {{R}\&{D} for {A}dvanced {LIGO} 2002--2006}, institution = {LIGO Project, document G010237-00-M}, year = 2001, } @techReport{Bhawal:02, author = {B. Bhawal and M. Evans and M. Rakhmanov and H. Yamamoto}, title = {{e}2e primitive module - reference manual}, institution = {LIGO Project, document T000047-03-E}, year = 2002, pages = {12}, jasnote = {documents right-handed, z-out, y-up convention'}, } @book{Svelto:89, author = {O. Svelto}, title = {Principles of Lasers}, publisher = {Plenum Press}, year = 1989, pages = {137--203}, jasnote = {darn good discussion of laser cavities and beam waist sizes}, } @book{Eberly:88, author = {P. W. Milonni and H. H. Eberly}, title = {Lasers}, publisher = {John Wiley and Sons}, year = 1988, pages = {484--500}, jasnote = {}, } @book{Thyagarajan:81, author = {K. Thyagarajan and A. K. Ghatak}, title = {Lasers: Theory and Applications}, publisher = {Plenum Press}, year = 1981, pages = {141--153}, jasnote = {good discussion of laser cavities}, } @article{Spehner:2002, author = {D. Spehner and M. Orszag}, title = {Quantum jump dynamics in cavity {Q}{E}{D}}, journal = {Journal of Mathematical Physics}, year = 2002, volume = 43, number = 7, pages = {3511--3537}, jasnote = {The opposite of our qubit Stern-Gerlach article}, } @book{Pinsky:1995, author = {R. G. Pinsky}, title = {Positive Harmonic Functions and Diffusion: an Integrated Analytic and Probabilistic Approach}, publisher = {Cambridge University Press}, city = {Cambridge}, year = 1995, jasnote = {the logical next book to read!}, } @book{Wasserman:92, author = {R. H. Wasserman}, title = {Tensors and Manifolds with Applications to Mechanics and Relativity}, publisher = {Oxford University Press}, year = 1992, jasnote = {see the discussion following page 29, Equation 3.2 for the dimensionality of product spaces. Use this to show that the product space of n spin-1/2 particles is spanned by 2^n basis vectors.}, } @article{Collins:03, author = {F. S. Collins and Eric D. Green and A. E. Guttmacher and M. S. Guyer}, title = {A vision for the future of genomics research.}, journal = {Nature}, year = 2003, pages = {839--847}, collinsquote = {page 846: \section{Quantum Leaps} It is interesting to speculate about potential revolutionary technical developments that might enhance research and clinical applications in a fashion that would rewrite entire approaches to biomedicine. The advent of the polymerase chain reaction, large-insert cloning systems and methods for low-cost, high-throughput DNA sequencing are examples of such advances that have already occurred.\\ \ldots The following is not intended to be an exhaustive list, but to provoke creative dreaming: [list concludes with] the ability to monitor the state of all proteins in a single cell in a single experiment."}, burnhamquote = {page 847, concluding quote (attributed to Daniel Burnham, architect): "Make no little plans; they have no magic to stir menÕs blood and probably will themselves not be realized. Make big plans; aim high in hope and work, remembering that a noble, logical diagram once recorded will not die, but long after we are gone will be a living thing, asserting itself with evergrowing insistency."}, } @book{Pace:1995, author = {S. Pace and G. and I. Lachow and D. Frelinger and D. Fossum and D. K. Wassem and M. Pinto}, title = {The Global Positioning System: Assessing National Policies}, publisher = {{RAND} Corporation}, number = {Report MR-614-OSTP}, chapter = {Appendix {B}: {G}{P}{S} History, Chronology, and Budgets}, year = 1995, jasquote = { Table B.2, page 270 \url{http://www.rand.org/publications/MR/MR614/#contents} page 270: Table B.3 Total GPS costs through 2016 are {\$}21.7 billion. (i.e., GPS is 30 X LIGO, just as LIGO is 30 X MOSAIC) page 243: Efforts to expand the fledgling GPS program suffered some growing pains during the development phase. The first setback was brought on by a 1979 decision by the Office of the Secretary of Defense (OSD) to cut {\$}500 million (approximately 30 percent) from the budget over the period FY81--FY86. As a result, the GPS program was restructured and the scope of the program reduced. The final satellite constellation was cut from 24 to 18 satellites (plus three satellites serving as on-orbit spares); Block II development satellites were dropped; and the design was scaled down in terms of weight, power, and nuclear and laser hardening. Plans for attainment of an early limited two-dimensional capability in 1981 were also dropped. Funding for GPS was somewhat unstable during the early stages of the program even though it received support from many elements of the services. Because GPS is a support system and not a standard weapon system with a clear mission and a history of well-defined operational concepts, early understanding of the value of the system was less straightforward than with tanks or aircraft. This increased the need to sell the program, particularly to potential users. The JPO addressed this problem, especially during Phase I, by emphasizing one of the more tangible capabilities of the system: increased bombing accuracy. The fact that GPS was a joint program also increased the need to sell the program to multiple services. No one service was anxious to bear the entire financial load for a support system that was to be used by all services. As a result, GPS had service support difficulties. For example, the program was zeroed out in 1980 through 1982, but was reinstated by OSD.It appears that OSD support contributed to the survival of the program. } } @article{Bromley:2003, author = {D. A. Bromley}, title = {What criteria should be used to establish funding priorities?}, journal = {Physics Today}, year = 2003, month = {June}, pages = {54--55}, jasquote = { page 55: "I can personally attest to the effectiveness of priority ranking as an approach to the making of enemies." also on page 55: "I suggest a specific approach wherein the priorities in any field of science and between fields would be based on objective answers to the following questions: \textbullet To what extent does the research have the potential of providing fundamental new understanding of our universe? \textbullet To what extent does the research have the potential of affecting other areas of scientific research? \textbullet to what extent does the research have the potential of leading to new generic technologies? \textbullet To what extent does the research contribute to national security, economic competitiveness, or improvement in our quality of life? \textbullet To what extent does the research hold promise of significant return on earlier scientific facility investments (for example, large telescopes, accelerators, of light sources)? \textbullet To what extent is the research at or near the international frontiers of work in the field?" }, } @book{Diamond:1992, author = {J. M. Diamond}, title = {The Third Chimpanzee: the Evolution and the Future of the Human Animal}, publisher = {HarperCollins}, year = 1992, jasquote = { From Epilogue: Nothing Learned and Everything Forgotten, page 366: "[New Guinea explorer Arthur Wichman] grew disillusioned as he realized that successive explorers committed the same stupidities again and again: unwarranted pride in overstated accomplishments, refusal to acknowledge disastrous oversights, ignoring the accomplishments of previous explorers, consequent repitition of previous errors, hence a long history of unnecessary sufferings and deaths. The bitter last sentence that concluded Wichman's last volume was: "Nothing learned, and everything forgotten!"}, } @book{Hoskin:2003, author = {M. Hoskin}, title = {The Herschel Partnership, as Viewed by Caroline}, publisher = {Science History Publications}, year = 2003, pages = {86}, jasquote = { William Hershel writes in 1785: "In a letter which Sir J. Banks laid before his Majesty, I have mentioned that it would require 12 or 15 hundred pounds to construct a 40-ft telescope, and that moreover the annual expenses attending the same instrument would amount to 150 or 200 pounds. As it was impossible to say exactly what some might be sufficient to finish so grand a work, I now find that many of the parts take up so much more time and labour of workmen, and more materials than I apprehended they would have taken, and that consequently my first estimate of the total expence will fall short of the real amount." Author M. Hoskin comments: "Not for the last time in the history of astronomy, an astronomer seeking support had been modest in his initial demands, knowing that the funding body, confronted later with a choice between writing off all the money spent so far or coughing up more, would cough up."}, } @book{Raven:1953, author = {C. E. Raven}, title = {Natural Religion and Christian Theology: Experience and Interpretation}, publisher = {Cambridge University Press}, year = 1953, pages = {112--113}, jasnote = {Every specimen differed from the rest, in detail from those of its own group, in total effect from those of others. Each was in itself a total design, satisfying in whole and parts, inviting one to concentrate one's whole attention upon it. To move from one to the other, to these the difference of impact, to wrk out the quality of this difference in the detailed modifications of the general pattern, this was a profoundly moving experience. Here is beauty---whatever the philosophers and critics who have never looked at a moth may say---beauty that rejoices and humbles, beauty remote from all that is meant by words like random or purposeless, utilitarian or materialistic, beauty in its impact and effects akin to the authentic encounter with God.}, } @book{Stephensen:1999, author = {N. Stephensen}, title = {Cryptonomicon}, publisher = {HarperCollins}, year = 1999, edition = {Perennial}, chapter = {{R}{A}{M}}, pages = {279}, jasquote = {from page 279: ``Sargeant Shaftoe!'' Root barks, doing such an effective impersonation of a Marine that Shaftoe and Benjamin both stiffen to attention.\\ ``Sir, Yes Sir!'' Shaftoe returns.\\ ``This is the first and last order I am going to give you, so listen carefully!'' Root insists.\\ ``Sir, Yes Sir!''\\ ``Sargeant Shaftoe, take me and the rest of this unit to Sweden!''\\ ``Sir, Yes Sir!'' Shaftoe hollers, and marches out of the cabin. page 131 "Don't talk to the Dentist. Ever. Not about anything. Not even about tech stuff. Any technical question he asks you is just a stalking horse for some business tactic that is as far beyond your comprehension as G\"{o}del's Proof would be to Daffy Duck."}, } @misc{Hilbert:1930, author = {D. Hilbert}, title = {Hilbert's 1920 radio address}, howPublished = {Audio recording and transcript}, editor = {J. T. Smith}, institution = {San Francisco State University}, url = {http://math.sfsu.edu/smith/Documents/HilbertRadio/}, year = 1930, jasquote = {file: HilbertRadio.pdf, HilbertRadio.mpg. "In fact, we donÕt master a theory in natural science until we have extracted its mathematical kernel and laid it completely bare." "We must know, we will know."}, } ^@misc{Coleridge:1791, author = {Samuel Taylor Coleridge}, title = {Letter to George Coleridge}, year = 1791, howPublished = {The Samuel Taylor Coleridge Archive}, url = {http://etext.lib.virginia.edu/stc/Coleridge/ascii_files/geometry_poem_letter.html }, jasquote = {I have often been surprised, that Mathematics, the quintessence of Truth, should have found admirers so few and so languid.---Frequent consideration and minute scrutiny have at length unravelled the cause---viz.---that though Reason is feasted, Imagination is starved; whilst Reason is luxuriating in it's [sic] proper Paradise, Imagination is wearily traveling on a dreary Desart [sic]. To assist reason by the stimulus of Imagination is the design of the following production. ... I have three strong champions to defend me against the attacks of Criticism: the Novelty, the Difficulty, and the Utility of the Work. (there follows a bad poetic presentation of the Pythagorean Theorem).}, } @book{Kay:93, author = {L. E. Kay}, title = {The Molecular Vision of Life: Caltech, the Rockefeller Foundation, and the Rise of the New Biology}, publisher = {Oxford University Press}, year = 1993, jasnote = {see reference 30, page 241, listing December 4 as the date of Pulings' submission}, } @article{Berman:03, author = {P. Berman}, title = {The Philospher of Islamic Terror}, journal = {New York Times Magazine}, year = 2003, volume = {March 23}, pages = {29}, jasquote = {[Sayyid] Qutb identified the kind of personal agony that Mohamed Atta and the suicide warriers of September 11 must have experienced in our own time. It was the agony of inhabiting a modern world of liberal ideas and achievements while feeling that true life exists somewhere else.}, } @article{Sachs:03, author = {S. Sachs}, title = {Egyptian Intellectual Speaks of the Arab World's Despair}, journal = {New York Times}, year = 2003, volume = {April 8}, pages = {B1}, jasquote = {Egyptian intellectual Ahmed Kamal Aboulmagd: "We should never lose hope, frustration is not an option. ... Many people are talking about the planet earth being no more a safe place for anyone, but I am optimistic. I believe dialogue is needed now, so we should not give in to desperation, to loss of hope, to pessimism. Rather we should act actively and continue the path of dialogue and the path of understanding, simply because we cannot afford the other consequence."}, } @article{Feynman:66, author = {R. P. Feynman}, title = {Nobel Lecture: The Development of the Space-Time View of Quantum Electrodynamics}, journal = {Physics Today}, month = {August}, year = 1966, pages = {31}, jasquote = {A useful quote for quantum measurement thoeory: "We are struck by the very large number of physical viewpoints and widely different mathematical formalisms that are all equivalent to one another."}, } @article{Beadle:48, author = {G. W. Beadle}, title = {Genes and Biological Enigmas}, journal = {American Scientist}, year = 1948, pages = {69}, volume = {36(1)}, jasnote = {"There can be no complete understanding of an organism in the absence of a knowledge of its evolutionary history" and "The agents of heredity are particulate."}, } @article{Warren:52, author = {S. Warren}, title = {The University and Science: Commensal or Parasite?}, journal = {American Scientist}, year = 1952, pages = {677-679}, volume = {40(4)}, jasnote = {Shields Warren: So long as science is supported without hindrance to other disciplines of learning, so long as it remains a free and open search for truth, so long as it is a stimulus to the exchange of ideas, it is a useful, nay, essential commensal. It adds to the total strength of the university. But subtract any one of these provisions and science becomes a parasite.}, } @inCollection{Cottrell:02, author = {A. H. Cottrell}, title = {Commentary: A brief view of work hardening}, booktitle = {Dislocations in Solids}, editor = {F. R. N Nabarro and M.S. Duesbery}, volume = 11, publisher = {Elsevier}, year = 2002, jasnote = {page xvi: The theory [of work hardening] is mainly still at the stage of being interpretive, not predictive. And it is very far from being a standard theory of physics, founded upon an agreed set of axioms, which lead to the master equations, from the solutions of which all the basic features of the subject unfold. It may never develop into such a theory. Work hardening is quite unique, unlike any other branch of physics science. While thoroughly physics in its elements, and obviously belonging to the `hard science' end of the inorganic world, its characteristics---huge populations of interacting individuals, competition and cooperation, organization and evolution of family groups---are more like those of biology; ecology in particular. It may be that the theory of work hardening will always be more Darwin than Newton.}, } @article{Forman:85, author = {P. Forman}, title = {Atomichron: the Atomic Clock from Concept to Commercial Product}, journal = {Proceedings of the IEEE}, volume = 73, pages = {1181--1204}, year = 1985, jasnote = {Under contract to the Army Signal Corps}, } @inProceedings{Schwarzschild:64, author = {M. Schwarzschild}, title = {Summary: Problems and Outlook}, booktitle = {Aspects of Stellar Evolution}, year = 1964, editor = {A. Beer and K. A. Strand}, pages = {4}, jasquote = {The value of a branch of science does not in itself guarantee the continuation of its flourishing. A branch of science, in spite of high intrinsic value, can wither and die if the scientific activities in it appear to consist of nothing but the straight continuation of the techniques and aims of the past. However valuable for getting results such a straight continuation of past activities might be ... it fails in one decisive respect. It does not provide the explicit challenge necessary to draw into the branch its fair share of bright young scientists.}, } @article{Paik:99, author = {D.-S. Paik and S.-E. Park and T.R. Shrout and W. Hackenberger}, title = {Dielectric and piezoelectric properties of perovskite materials at cryogenic temperatures}, journal = {Journal of Materials Science}, year = 1999, volume = 34, pages = {469--473}, jasnote = {strains of up to 1 per cent, little degradation at cryogenic temperatures (d31 5x-10x greater} } @article{Grosshans:03, author = {F. Grosshans and G. Van Assche and J. Wenger and R. Brouri and N. J. Cerf and P. Grangier}, title = {Quantum key distribution using gaussian-modulated coherent states}, journal = {Nature}, year = 3002, volume = 241, pages = {238--241}, jasnote = {cryptography}, } @article{Rasmussen:96, author = {N. Rasmussen}, title = {Making a machine instrumental: {R}{C}{A} and the wartime origins of biological electron microscopy in {A}merica, 1940-1945}, journal = {Studies in History and Philosophy of Science}, year = 2003, volume = 27, number = 3, pages = {311--339}, jasquote = {page 314: "As Zworykin [of RCA] realized, the frequent expert attention required by the Model A was a huge obstacle to its marketability." page 333 "the government ... granted model B production AA1 status, top priority." reflecting in part (page 334) "the wartime moral ideology of patriotic cooperation between industry and academia" SUpported by the OSRD (Office of Scientific Research and Development) ... of 58 model B's produced, only 12 used mainly for biology ... many of the rest lost to secret work on then-advanced fields like polymer resaerch..}, } ^@misc{Jones:03xxx, author = {M. P. A. Jones and C. J. Vale and D. Sahagun and B. V. Hall and E. A. Hinds}, title = {Thermally induced spin flips above an atom chip}, howpublished = {arXiv.org e-Print archive}, url = {http://arXiv.org/abs/quant-ph/0301018}, year = 2003, jasnote = {found magnetic thermal noise indiced flips at a distance of 27 microns at room temperature}, } ^@misc{Fisher:02xxx, author = {A. J. Fisher}, title = {Lower limit on decoherence induced by entangling two spatially-separated qubits}, howpublished = {arXiv.org e-Print archive}, url = {http://arXiv.org/abs/quant-ph/0211200}, year = 2002, jasnote = {found magnetic thermal noise indiced flips at a distance of 27 microns at room temperature}, } @book{Caporale:03, author = {L. H. Caporale}, title = {Darwin in the Genome: Molecular Strategies in Biological Evolution}, publisher = {McGraw-Hill}, year = 2003, pages = {201}, jasquotea = {Lynn Caporale, pp. 118: For the tumors and pathogens that threaten us, we can begin to pull back from hand-to-hand combat. We have, or will soon be getting, the battle plans of our skilled opponents. We have broken their simplest codes, and now we must focus on understanding their strategies---what keeps them going, what will make them turn left instead of right, climb the mountain instead of dig a bunker.}, jasquoteb = {pp. 201: The image of our isolated home, the Earth, an inviting blue world wreathed in white clouds circling in the deep blackness of space, should stop us in our tracks. It should spur us on to protect our planet, with its thin rim of air and its diverse gifts of life, but somehow we get distracted, day to day. So, too, should we take a step back and absorb the knowledge we carry within us , encoded in an ancient helical ribbon. Soon, when the view of our genome no longer is limited to a few thousand scientists in laboratories busily sorting it all out, when we can all look at it and understand it and talk about it, we will see our deep kinship to one another and our connection to all life on Earth. We were created together, and in the long run our fates are intertwined.}, jasquotec = {pp. 133: quotes Eli Whitney: One of my primary objectives is to form the tools so that the tools themselves shall fashion the work.}, } @book{Morrison:99, author = {R. Morrison}, title = {The Spirit in the Gene: Humanity's Proud Illusion and the Laws of Nature}, publisher = {Cornell University}, year = 1999, jasnote = {page = 198: Curiously, it is irrationality itself that serves as sword and shield in the hands of the true believer. The more unsupported and untestable the proposition, the greater the leap of faith required to grasp it. Consequently, the greater the satisfaction it engenders in those who safely make that daring leap, and the more energy and passion they expend to protect that investment. ... Faith conceals a genetic lure that in most circumstances is totally irresistable. The bait is an immediate return to our genetic womb. With one bold act of submission---and a quick retreat from reality---we can once more become members of a small embattled tribal group, mystically bonded to one another and inherently heroic. "We few, we happy few, we band of brothers." (Henry V, Acti IV, Scene iii). The urge to belong to a tribe remains incomparably seductive and thoroughly immune to rational accounting.}, } @book{Breuer:03, author = {H.-{P}. Breuer and F. Petruccione}, title = {The Theory of Open Quantum Systems}, publisher = {Oxford University Press}, year = 2002, chapter = {6.2}, pages = {320--321}, jasquote = {These guys note that the stochastic representation is not unique -- this is key to quantum cryptographic applications. Views as a piecewise deterministic process (PDP) with quantum jumps. Sad to say, not much cross reference to Michael Minsky! Even though 6.42 is essentially a Minsky-style path integral result.}, } @book{Hoddeson:02, author = {L. Hoddeson and V. Daitch}, title = {True Genius: The Life and Science of John Bardeen}, publisher = {Joseph Henry Press}, year = 2002, page = {245}, pages = {245--7}, jasquote = {John Bardeen's philosophy at Xerox Corporation, pages 245: "Invention does not occur in a vacuum \ldots [most advances] are made in response to a need, so that it is necessary to have some sort of practical goal in mind while the basic research is being done; otherwise it may be of little value." P. 247 "There is really no sharp dividing line between basic and applied research." Charles Schreiffer, page 182: "The spirit will not be aroused in the student by one who is himself not filled with it."}, } @article{Irvine:02, author = {A. Abbott}, title = {Into Unknown Territory}, journal = {Nature}, volume = 420, pages = {600--601}, year = 2002, jasquote = {quotes Robert Irvine, "The inside of a cell is a thick soup of proteins talking to each other in ways we just don't understand."}, } @book{Kashiwa:97, author = {T. Kashiwa and Y. Ohnuki and M. Suzuki}, title = {Path Integral Methods}, publisher = {Clarendon Press, Oxford}, year = 1997, Chapter = {3.4}, pages = {119--130}, jasnotes = {Good section on spin path integrals}, } @book{Schulman:81, author = {L. S. Schulman}, title = {Techniques and Applications of Path Integration}, publisher = {John Wiley and Sons}, year = 1981, chapter = {22--24}, jasnotes = {Good section on spin path integrals. Very humorous!}, } @article{Hilbert:00, author = {G. M. Duyk}, title = {Sharper tools and simpler methods}, journal = {Nature Genetics Supplement}, volume = 32, pages = {465--468}, year = 2002, jasquote = {quotes David Hilbert, International Congress of Mathematicians, Paris 1999: Every real advance goes hand-in-hand with the invention of sharper tools and simpler methods.}, } @article{Smoot:90, author = {G. Smoot and C. Bennett and R. Weber and J. Maruschak and R. Ratliff and M. Janssen and J. Chitwood and L. Hilliard and M. Lecha and R. Mills and R. Patschke and C. Richards and C. Backus and J. Mather and M. Hauser and R. Weiss and D. Wilkinson and S. Gulkis and N. Boggess and E. Cheng and T. Kelsall and P. Lubin and S. Meyer and H. Moseley and T. Murdock and R. Shafer and R. Silverberg and E. Wright}, title = {COBE differential microwave radiometers: instrument design and implementation}, journal = {Astrophysical Journal}, year = 1990, volume = 360, pages = {685--95}, jasquote = {COBE == Cosmic Background Explorer. "a differential radiometer is a device whose output voltage is proportional to the difference in power received by two antennas ... the use of a differential radiometer obviates the need for making absolute measurements with accuracy at the 10^-4 level ... this reduces the need for gain stability ... signals that arise from asymmetries in the instrument will be reduced further by the orbital and precessional switching ... it is important to ensure that nothing internal to the radiometer changes synchronously with any of these modulation periods.}, } @article{Braginsky:97, author = {V. B. Braginsky and M. L. Gorodetsky and F. Ya. Khalili}, title = {Optical bars in gravitational wave antennas}, journal = {Physics Letters A}, year = 1997, volume = {232(2)}, pages = {340--8}, } @article{Braginsky:02, author = {V. B. Braginsky and S. P. Vyatchanin}, title = {Low quantum noise tranquilizer for FabryÐPerot interferometer}, journal = {Physics Letters A}, year = 2002, pages = {228--234}, volume = 293, jasnote = {We discuss the possibility to introduce low noise damping produced by light into mechanical oscillator (one of the FabryÐ Perot (FP) resonator mirrors is the mechanical resonator). Pumping FP resonator, by light detuned from resonance one can create the positive or negative rigidity in mechanical oscillator. Such a rigidity being introduced with delay (of the order of relaxation time of FP resonator) is equivalent to additional low noise damping. We propose to introduce this damping to tranquilize (to depress) parametric oscillatory instability in FP interferometer (Phys. Lett. A 287 (2001) 331) which is undesirable in laser gravitational wave antennae. Note: fluctuational force induced by damping.}, } @article{Braginsky:01c, author = {V. B. Braginsky and F. Ya. Khalili and P. S. Volikov}, title = {The analysis of table-top quantum measurement with macroscopic masses}, journal = {Physics Letters A}, year = 2001, pages = {31--38}, volume = {287(1--2)}, jasnote = {The analysis of a table-top quantum experiment with a mechanical test mass is presented. The scheme of the experiment is based on two principles: the difference between the free test mass and the oscillator sensitivity standard quantum limits, and the use of mechanical rigidity produced by an optical pumping field in a Fabry-Perot resonator to convert the free test mass into the mechanical oscillator having very low intrinsic noise. The analysis shows that proposed scheme allows one to overpass the free test mass standard quantum limit by the factor approximately=0.1}, } @article{Braginsky:98, author = {V. B. Braginsky}, title = {Decoherence and quantum nondemolition measurements in the {L}{I}{G}{O} project}, journal = {Physica Scripta}, volume = {T76}, pages = {122--126}, year = 1998, jasnote = {"optimally pumped and tuned Fabry-Perot resonators act like mechanical bars." "Several unsolved problems in the quantum theory of measurement" "To propose and analyze QND measurement schemes for any observable 25. "}, } @article{Buonanno:02b, author = {A. Buonanno and Y. Chen}, title = {Laser-interferometer gravitational-wave optical-spring detectors}, journal = {Classical and Quantum Gravity}, volume = 19, pages = {1569--1574}, year = 2002, jasnote = {The radiation-pressure force acting on the mirrors not only disturbs the motion of the free masses randomly due to quantum fluctuations, but also and more fundamentally, makes them respond to forces as though they were connected to an (optical) spring with a specific rigidity. This oscillatory response gives rise to a much richer dynamics than previously known, which enhances the possibilities for reshaping the LIGO-IIÕs noise curves. However, the opticalÐmechanical system is dynamically unstable and an appropriate control system must be introduced to quench the instability ... and a much more careful and precise study of the control system should be carried out, including various readout schemes [14], before any practical implementation.}, } @article{Buonanno:01a, author = {A. Buonanno and Y. Chen}, title = {Optical noise correlations and beating the standard quantum limit in advanced gravitational-wave detectors}, journal = {Classical and Quantum Gravity}, volume = 18, pages = {L95--L101}, year = 2001, jasnote = {Braginsky and colleagues have shown that the test-mass wave-function aspect of the uncertainty principle is irrelevant to the operation of a GW interferometer.}, } @article{Buonanno:01b, author = {A. Buonanno and Y. Chen}, title = {Quantum noise in second generation, interferometric, signal-recycled laser gravitational-wave detectors}, year = 2001, journal = {Physical Review D}, volume = {64(4)}, pages = {042006/1--21}, jasnote = {Summarizes the present working model for LIGO noise. Quotes SQL for general relativity S_h = 8 \hbar/(m \Omega^2 L^2). More dubiously, quotes V.B. Braginsky, M.L. Gorodetsky, F.Ya. Khalili, A.B. Matsko, K.S. Thorne and S.P. Vyatchanin, Noise in gravitational-wave detectors is not influenced by test-mass quantization, in preparation. For peer review, see V.B. Braginsky, M.L. Gorodetsky and F. Ya. Khalili, Phys. Lett. A 232 (1997) 340; V.B. Braginsky and F. Ya. Khalili, Phys. Lett. A 257 (1999) 241.}, } @article{Buonanno:02a, author = {A. Buonanno and Y. Chen}, title = {Signal recycled laser-interferometer gravitational-wave detectors as optical springs}, journal = {Physical Review D}, volume = {65(4)}, pages = {042001/1-26}, year = 2002, jasnote = {Quotes SQL for general relativity S_h = 8 \hbar/(m \Omega^2 L^2).}, } @article{Braginsky:03, author = {V. B. Braginsky and M. L. Gorodetsky and F. Ya. Khalili and A. B. Matsko and K. S. Thorne and S. P. Vyatchanin}, title = {The noise in gravitational-wave detectors and other classical-force measurements is not influenced by test-mass quantization}, year = 2003, journal = {Physical Review D}, volume = {67(8)}, pages = {82001-1-18}, } @misc{Penrose:02, author = {W. Marshall and C. Simon and R. Penrose and D. Bouwmeester}, title = {Towards quantum superpositions of a mirror}, eprint = {quant-ph/0210001}, jasnote = {macroscopic superposition based on *one* photon effects}, } @article{Khalili:01, author = {F. Ya. Khalili}, title = {Frequency-dependent rigidity in large-scale interferometric gravitational-wave detectors}, journal = {Physics Letters A}, volume = 288, year = 2001, pages = {251--256}, jasnote = {recognizes that rigidity is frequency-dependent, allows evasion of the SQL}, } @book{Abragam:61, author = {A. Abragam}, title = {Principles of Nuclear Magnetism}, publisher = {Clarendon, Oxford}, year = 1961, } @book{Abramowitz:65, editor = {M. Abramowitz and I. A. Stegun}, title = {Handbook of Mathematical Functions}, publisher = {US Government Printing Office}, address = {Washington}, edition = {10th}, chapter = 5, year = 1964, } @book{Alberts:94, author = {B. Alberts and D. Bray and J. Lewis and M. Raff and K. Roberts and J. D. Watson}, title = {Molecular Biology of the Cell}, publisher = {Garland, New York}, edition = {3rd}, year = 1994, } @article{Albrecht:91, author = {T. R. Albrecht and D. Gr\"utter and D. Horne and D. Rugar}, title = {Frequency modulation detection using high-{Q} cantilevers for enhanced force microscope sensitivity}, journal = {Journal of Applied Physics}, year = 1991, volume = 69, number = 2, pages = {668--73}, } @book{Alibek:99, author = {K. Alibek}, title = {Biohazard}, publisher = {Random House}, year = 1999, jasnote = {This is an interview with former Soviet Colonel and doctor Kanatjan Alibekov, now known as Ken Alibek. Dr. Alibek was the 1st Deputy Chief of the secret Soviet germ warfare program, Biopreparat, from 1988 to 1992. In 1992, Dr. Alibek defected to the United States and has since spent his time briefing U.S. military, intelligence, and medical officials about biological weapons and defenses. Dr. Alibek holds both M.D. and PhD. degrees.}, } @book{Altshuler:64, author = {S. A. Al'tshuler and B. M. Kozyrev}, title = {Electron Paramagnetic Resonance}, publisher = {Academic Press}, year = 1964, city = {New York and London}, jasnote = {The best source on dilute organic free radicals}, } @article{Amrein:89, author = {M. Amrein and R. Durr and A. Stasiak and H. Gross and G. Travaglini}, title = {Scanning tunneling microscopy of uncoated rec{A-DNA} complexes}, journal = {Science}, year = 1989, volume = 243, number = 4899, pages = {1708--11}, } @article{Anderson:52, author = {T. W. Anderson and D. A. Darling}, journal = {Annals of Mathematical Statistics}, title = {Asymptotic theory of certain ``goodness of fit'' criteria based on stochastic processes}, volume = 23, pages = {193--212}, year = 1952, } @article{Ascoli:96, author = {C. Ascoli and P. Baschieri and C. Frediani and L. Lenci and M. Martinelli and G. Alzetta and R. M. Celli and L. Pardi}, title = {Micromechanical detection of magnetic resonance by angular momentum absorption}, journal = {Applied Physics Letters}, year = 1996, volume = 69, number = 25, pages = {3920--2}, } @article{Awschalom:01, author = {R. K. Kawakami and Y. Kato and M. Hanson and I. Malajovich and J. M. Stevens and E. Johnston-Halperin and G. Salis and A. C. Gossard and D. D. Awschalom}, title = {Ferromagnetic Imprinting of Nuclear Spins in Semiconductors}, journal = {Science}, volume = 294, pages = {131--4}, year = 2001, jasnote = {very good treatise on dynamic polarization}, } @book{Balescu:75, author = {R. Balescu}, title = {Equilibrium and nonequilibrium statistical mechanics}, publisher = {Wiley}, address = {New York}, year = 1975, pages = {663--699}, jasnote = {These pages discuss the fluctuation-dissipation theorem}, } @article{Baltz:91, author = {T. Baltz and C. Giroud and F. Bringaud and H. Eisen and C. Jacquemot and C. W. Roth}, title = {Exposed epitopes on a Trypanosoma equiperdum variant surface glycoprotein altered by point mutations}, journal = {EMBO}, year = 1991, volume = 19, pages = {1653-9}, jasnote = {African trypanosomes are covered by a dense protein layer that is immunologically distinct on different trypanosome isolates and is termed the variant surface glycoprotein (VSG). The different VSGs are expressed in a general order, where some VSGs appear preferentially early in infection and others only later. The exposed epitopes on a late antigen, VSG 78, of T.equiperdum were studied by the technique of monoclonal antibody (MAb) escape selection.}, } @article{Barton:91, author = {G. Barton}, title = {On the fluctuations of the Casimir force}, journal = {Journal of Physics A}, volume = {24(5)}, pages = {991--1005}, year = 1991, } @article{Barton:91a, author = {G. Barton}, title = {On the fluctuations of the Casimir forces II: The stress-correlation function}, journal = {Journal of Physics A}, volume = {24(23)}, pages = {5533--51}, year = 1991, } @inBook{Barton:94, booktitle = {Advances in Atomic, Molecular and Optical Physics, Supplement 2}, author = {G. Barton}, title = {New aspects of the casimir effect: fluctuations and radiative reaction}, pages = {425--458}, publisher = {Academic Press}, address = {San Diego}, year = 1994, } @article{Bartunik:92, author = {H. D. Bartunik and L. J. Bartunik and H. Viehmann}, title = {Time resolved {X}-ray diffraction studies of enzymes under cryoconditions}, journal = {Phil. Trans. R. Soc. Lond.}, year = 1992, volume = 340, number = 1647, pages = {209--20}, } @inCollection{Bateman:54, author = {H. Bateman}, title = {Tables of {I}ntegral {T}ransforms}, booktitle = {Bateman Manuscript Project}, volume = 2, editor = {A. Erd{\'{e}}lyi}, publisher = {McGraw-Hill}, city = {New York}, year = 1954, jasnote = {Chapter {XIV} discusses Stieltjies transforms. } } @inCollection{Baum:01, author = {D. A. Baum and M. J. Donoghue}, title = {A likelihood framework for the phylogenetic analysis of adaptation}, booktitle = {Adaptationism and Optimality}, editor = {S. H. Orzack and E. Sober}, publisher = {Cambridge University Press}, pages = {219--41}, year = 2001, jasnote = {Use of geological metaphors in evolutionary theory, evolutionay biology as a guidebook in which not only the peaks and heights are of interest, but also the surrounding topography. See Baum:01, Gilchrist:01,Orzack:01. }, } @article{Bennink:01, author = {M. L. Bennink and S. H. Leuba and G. H. Leno and J. Zlatanova and B. G. de Grooth and J. Greve}, title = {Unfolding individual nucleosomes by stretching single chromatic fibers by optical tweezers}, journal = {Nature Structural Biology}, year = 2001, volume = 8, number = 7, pages = {606--610}, jasnote = {Summary: DNA wrapping around individual histones is prevented by 10 pN tension, unwrapping requires 20-40 pN of tension. Background noise is about +/- 2 pN in unspecified bandwidth. Thus, biological forces are of order 10 pN, about 10^7 aN.} } @unpublished{Berman:00, author = {G. P. Berman and F. Borgonovi and G. Chapline and S. A. Gurvitz and P. C. Hammel and V. I. Tsifrinoovish}, title = {Formation and Dynamics of a Schrodinger-Cat State in Continuous Quantum Measurement}, note = {LANL preprint quant-ph/0101035 (\texttt{http://xxx.lanl.gov})}, jasnote = {Failes to cite Sidles, Garbini, and Drobny}, } @article{Berman:00a, author = {G. P. Berman and G. D. Doolen and P. C. Hammel and V. I. Tsifrinovich}, title = {Solid-state nuclear-spin quantum computer based on magnetic resonance force microscopy}, journal = {Physical Review B}, year = 2000, volume = 61, number = 21, pages = {14694--9}, } @article{Berman:00b, author = {G. P. Berman and G. D. Doolen and V. I. Tsifrinovich}, title = {Solid-state quantum computation. A new direction for nanotechnology}, journal = {Superlattices and Microstructures}, year = 2000, volume = 27, number = {2-3}, pages = {89--104}, jasnote = {Proposes MRFM quantum computer}, } @article{Berman:00c, author = {G. P. Berman and V. I. Tsifrinovich}, title = {Modified approach to single-spin detection using magnetic resonance force microscopy}, journal = {Physical Review B}, year = 2000, volume = 61, number = 5, pages = {3524--7}, } @article{Berman:99, author = {G. P. Berman and D. K. Campbell and G. D. Doolen and K. E. Nagaev}, title = {Electron-nuclear spin dynamics in a mesoscopic solid-state quantum computer}, journal = {Microelectronic Engineering}, year = 1999, volume = 47, number = {1--4}, pages = {227--9}, } @book{Berry:66, author = {B. S.Berry and A. S. Nowick}, title = {Physical Acoustics Vol. IIIA}, publisher = {Academic, New York}, year = 1966, } @book{Bertero:98, author = {M. Bertero and P. Boccacci}, title = {Introduction to Inverse Problems in Imaging}, publisher = {Institute of Physics Publishing}, city = {Bristol and Philadelphia}, year = 1998, jasnote = {page 51 defines the nomenclature as follows: Ours Theirs G K Green function impulse response function, or point spread function (PSF) sample object data image }, } @article{Binnig:82, author = {G. Binning and H. Rohrer and C. Gerber and E. Weibel}, title = {Surface Studies by scanning tunneling microscopy}, journal = {Sensors and Actuators}, year = 1982, volume = 49, number = 1, pages = {57--61}, } @article{Binnig:82b, author = {G. Binnig and H. Rohrer and C. Gerber and E. Weibel}, title = {Tunneling through a controllable vacuum gap}, journal = {Applied Physics Letters}, year = 1982, volume = 40, number = 2, pages = {178--80}, } @article{Binnig:83, author = {G. Binnig and H. Rohrer and C. Gerber and E. Weibel}, title = {7*7 reconstruction on {S}i(111) resolved in real space}, journal = {Physical Review Letters}, year = 1983, volume = 50, number = 2, pages = {120--3}, } @article{Binnig:86, author = {G. Binnig and C. F. Quate and C. Gerber}, title = {Atomic force microscope}, journal = {Physical Review Letters}, year = 1986, volume = 56, number = 9, pages = {930--3}, } @book{Bjorken:64, author = {J. D. Bjorken and S. D. Drell}, title = {Relativistic Quantum Mechanics}, publisher = {McGraw-Hill}, year = 1964, } @book{Bjorken:65, author = {J. D. Bjorken}, title = {Relativistic Quantum Fields}, publisher = {McGraw-Hill}, address = {New York}, year = 1965, note = {see Section~15.2.}, } @book{Blair:91, author = {D. G. Blair}, title = {The Detection of Gravitational Waves}, publisher = {Cambridge Univ. Press, Cambridge}, year = 1991, } @article{Bloembergen:59, author = {N. Bloembergen and S. Shapiro and P. S. Pershan and J. O. Artman}, title = {Cross-relaxation in spin systems}, journal = {Physical Review}, year = 1959, volume = 114, number = 2, pages = {445--459}, } @inProceedings{Bloom:93, author = {M. Bloom}, editor = {B. Maraviglia}, title = {Nuclear Magnetic Double Resonance}, booktitle = {Proceedings of the International School of Physics `Enrico Fermi'}, year = 1993, address = {Amsterdam}, publisher = {North Holland}, pages = {473--84}, } @inProceedings{Bonn:96, author = {D. A. Bonn and W. N. Hardy}, title = {Microwave surface impedance of high temperature superconductors}, booktitle = {Physical Properties of High Temperature Superconductors V}, editor = {Donald M. Ginsberg}, publisher = {World Scientific}, year = 1996, pages = {9--97}, jasnote = {The temperature dependence of the conductivity in superconductors has been much studied and is well understood. At finite temperatures a mixture of superconducting and normal phase charge carriers is present, and in consequence the conductivity has both real and imaginary parts. The resulting theory of energy dissipation is quite complicated. For a review of the literature, including experimental measurements, see here ...}, } @article{Bosciano:86a, author = {R. Bosciano and F. M. Gelardi and R. N. Mantegna}, title = {Spectral diffusion and saturation kinetics in inhomogenous systems}, journal = {Journal of Magnetic Resonance}, year = 1986, volume = 70, pages = {251--261}, } @article{Bosciano:86b, author = {R. Bosciano and F. M. Gelardi and R. N. Mantegna}, title = {The experimental detection of spectral diffusion by the saturation transient method}, journal = {Journal of Magnetic Resonance}, year = 1986, volume = 70, pages = {262--269}, } @article{Braginsky:99, author = {V. B. Braginsky and F. Ya. Khalili}, title = {Low noise rigidity in quantum measurements}, journal = {Physics Letters A}, year = 1999, volume = 257, number = {5--6}, pages = {227--341}, jasnote = {good reference for stroboscopic QND}, } @article{Brown:86, author = {L. S. Brown and G. Gabrielse}, title = {Geonium theory: physics of a single electron or ion in a {P}enning trap}, journal = {Review of Modern Physics}, year = 1986, volume = 58, number = 1, pages = {233--313}, } @book{Brown:92, author = {L. S. Brown}, title = {Quantum Field Theory}, publisher = {Cambridge University Press}, year = {1992}, chapter = {1}, } @article{Bruce:56, author = {C. R. Bruce and R. E. Norberg and G. E. Pake}, title = {Radiation Damping and Resonance Shapes in High Resolution Nuclear Magnetic Resonance}, journal = {Physical Review}, volume = 104, pages = {419--420}, year = 1956, jasnote = {Shows that lumped-circuit elelectrical parameters can modulate the damping times of spins}, } @article{Bruines:82, author = {J. J. P. Bruines and V. J. de Waal and J. E. Mooj}, title = {Comment on: '{DC SQUID}: noise and optimization' by {T}esche and {C}larke}, journal = {Journal of Low Temperature Physics}, year = 1982, volume = 46, pages = {383--96}, } @article{Bruland:95, author = {K. J. Bruland and J. Krzystek and J. L. Garbini and J. A. Sidles}, title = {Anharmonic modulation for noise reduction in magnetic resonance force microscopy}, journal = {Review of Scientific Instruments}, year = 1995, volume = 66, number = 4, pages = {2853--6}, jasnote = {This article describes the first MRFM experiment performed at the University of Washington, or indeed by any MRFM group other than the IBM group. It provided independent confirmation that MRFM theory and experiment are in good accord. The novel modulation scheme employed in this experiment (anharmonic magnetic mixing within the sample) demonstrates the third of four possible interaction Hamiltonians in a systematic classification of all terms up to third order in applied fields (see the discussion of \cite{Dougherty:96}).}, } @article{Bruland:96, author = {K. J. Bruland and J. L. Garbini and W. M. Dougherty and J. A. Sidles}, title = {Optimal control of force microscope cantilevers. {II}. {M}agnetic coupling implementation}, journal = {Journal of Applied Physics}, year = 1996, volume = 80, number = 4, pages = {1959--64}, jasnote = {This article is the experimental companion to \cite{Garbini:96}. It is demonstrated that near-optimal levels of cantilever control are achievable in practice, by a technique in which magnetic torques are applied to the cantilever tip by an external coil. Practical circuits are presented for implementing optimal controlers using off-the-shelf electronic components. A broad range of controllers are implemented and shown to yield satisfactory agreement with theoretical expectations for optimal control.}, } @article{Bruland:98a, author = {K. J. Bruland and J. L. Garbini and W. M. Dougherty and J. A. Sidles}, title = {Optimal control of ultrasoft cantilevers for force microscopy}, journal = {Journal of Applied Physics}, year = 1998, volume = 83, pages = {3972--3977}, } @article{Bruland:98b, author = {K. J. Bruland and W. M. Dougherty and J. L. Garbini and S. H. Chao and J. A. Sidles}, title = {Force-detected magnetic resonance in a field gradient of 250,000 Tesla per meter}, journal = {Applied Physics Letters}, year = 1998, volume = 73, pages = {3159--3161}, } @article{Bruland:99, author = {K. J. Bruland and J. L. Garbini and W. M. Dougherty and S. H. Chao and S. E. Jensen and J. A. Sidles}, title = {Thermal tuning of a fiber-optic interferometer for maximum sensitivity}, journal = {Review of Scientific Instruments}, volume = 70, pages = {3542-3544}, year = 1999, } @article{Brun:97, author = {T. A. Brun}, title = {Quantum jumps as decoherent histories}, journal = {Physical Review Letters}, year = 1997, volume = 78, pages = {1833Ð-1837}, jasnote = {Good overview of SSE formalism}, } @article{Buser:90, author = {R. A. Buser and N. F. de Rooij}, title = {Very high {Q}-factor resonators in monocrystalline silicon}, journal = {Sensors and Actuators A}, year = 1990, volume = 21, pages = {323--7}, } @article{Caves:80, author = {C. M. Caves}, title = {Quantum-mechanical radiation-pressure fluctuations in an interferometer}, journal = {Physical Review Letters}, year = 1980, volume = 45, number = 2, pages = {75--79}, jasnote = {"The rigorous analysis reveals two different, but equivalent, points of view on the origin of the relevant radiation pressure fluctuations. The first point of view identifies the beam splitter as the culprit ... if too many photons go down one arm, two few go down the other, and this is precisely what is necessary to produce a \sqrt{N} fluctuating force. ... The second point of view focuses on vacuum (zero-point) fluctuations in the electromagnetic field. These vacuum fluctuations produce the required \sqrt{N} fluctuating force."}, } @article{Caves:81, author = {C. M. Caves}, title = {Quantum-mechanical noise in an interferometer}, journal = {Physical Review D}, year = 1981, volume = 23, number = 8, pages = {1693--708}, jasnote = {Caves' eq. 1.2: Optimum input power P = 1/2 (m c^2/\tau) (1/\omega\tau)(1/b^2) where "b is the number of bounces at each end mirror"}, } @article{Caves:86, author = {C. M. Caves}, title = {Quantum mechanics of measurements distributed in time. {A} path-integral formulation}, journal = {Physical Review D}, year = 1986, volume = 33, number = 6, pages = {1643--1655}, jasnote = {Defines \emph{resolution amplitude} = \pho(x,xmeasure,n)}, } @inCollection{Caves:86b, author = {C. M. Caves}, title = {Measurements distributed in time}, booktitle = {Quantum Measurement and Chaos}, editor = {R. R. Pike and S. Sarkar}, pages = {195--208}, publisher = {Plenum Press}, year = 1986, jasnote ={Explicitly states that resolution amplitudes include the effects of back action.}, } @article{Caves:87a, author = {C. M. Caves}, title = {Quantum mechanics of measurements distributed in time. {II}. {C}onnections among formulations}, journal = {Physical Review D}, year = 1987, volume = 35, number = 6, pages = {1815--1830}, jasnote = {Continuation of Caves:86}, } @article{Caves:87b, author = {C. M. Caves and G. J. Milburn}, title = {Quantum-mechanical model for continuous position measurements}, journal = {Physical Review A}, year = 1987, volume = 36, number = 12, pages = {5543--5555}, jasnote = {Uses the notion of a resolution amplitude (defined in an earlier Caves article). Meters defined abstractly.} } @unpublished{Celera:01, author = {Celera}, title = {Celera Mission Statement}, note = {Available on-line at: \\ ``\texttt{http://www.celera.com/company/company.cfm}''}, year = 2001, } @article{Chabot:99, author = {M. D. Chabot and J. T. Markert}, title = {Microfabrication of single-crystal multiple torsion oscillators}, journal = {Proceedings of the SPIE, The International Society for Optical Engineering}, year = 1999, volume = 3875, pages = {104--12}, jasnote = {University of Texas MRFM group}, } @article{Chan:97, author = {D. C. Chan and D. Fass and J. M. Berger and P. S. Kim}, title = {Core structure of gp41 from the HIV Envelope Glycoprotein}, journal = {Cell}, volume = 89, pages = {263-273}, year = 1997, jasnote = {The envelope glycoprotein of HIV-1 consists of a complex of gp120 and gp41. gp120 determines viral tropism by binding to target-cell receptors, while gp41 mediates fusion between viral and cellular membranes. ... this article attempts to establish structure-function relations which describe the fusion process.}, } @article{Chen:91, author = {C. J. Chen}, title = {In situ testing and calibration of tube piezoelectric scanners}, journal = {Ultramicroscopy}, year = 1991, volume = {42-44}, pages = {1653--1658}, } @article{Chen:94, author = {G. Y. Chen and R. J. Warmack and T. Thundat and D. P. Allison and A. Huang}, title = {Resonance response of scanning force microscopy cantilevers}, journal = {Review of Scientific Instruments}, year = 1994, volume = 65, number = 8, pages = {2532--7}, } @article{Cho:94, author = {Y. Cho and S. Gorina and P. D. Jeffrey and N. P. Pavletich}, title = {Crystal Structure of a p53 tumor suppressor-{DNA} complex: understanding tumorigenic mutations}, journal = {Science}, year = 1994, volume = 265, number = 5170, pages = {346--55}, } @article{Christendat:00, author = {D. Christendat and A. Yee and A. Dharamsi and Y. Kluger and A, Savchenko and J. R. Cort and V. Booth and C. D. Mackereth and V. Saridakis and I. Ekiel and G. Kozlov and K. L. Maxwell and N. Wu and L. P. McIntosh and K. Gehring and M. A. Kennedy and A. R. Davidson and E. F. Pai and M. Gerstein and A. M. Edwards and C. H. Arrowsmith}, title = {Structural proteomics of an archeon}, journal = {Nature Structural Biology}, year = 2000, volume = 7, number = 10, page = {903--908}, } @book{Clarke:1990, author = {J. Clarke}, title = {Superconducting Devices}, publisher = {Academic, New York}, year = 1990, } @article{Clore:94, author = {G. M. Clore and J. G. Omichinski and K. Sakaguchi and N. Zambrano and H. Sakamoto and E. Appella and A. M. Groneborn}, title = {High-resolution structure of the oligomerization domain of p53 by multidimensional {NMR}}, journal = {Science}, year = 1994, volume = 265, number = 5170, pages = {346--55}, } @book{Cory:92, author = {D. G. Cory}, title = {Annual Reports on NMR Spectroscopy}, publisher = {Academic Press, London}, year = 1992, } @book{CRC:99, editor = {D. L. Lide}, edition = {80th}, title = {Handbook of Chemistry and Physics}, address = {New York}, publisher = {CRC Press}, year = 1999, jasnote = {Iron conductivities are: T 10^{-8} Ohm-meter, 1 0.0225; 10 0.0238; 20 0.0287; 40 0.0758; 60 0.271; 80 0.693; 100 1.28; 150 3.15; 200 5.20; 273 8.57}, } @article{Croft:01, author = {D. Croft and G. Shed and S. Devasia}, title = {Creep, Hysteresis, and Vibration Compensation for Piezoactuaors: Atomic Force Microscopy Application}, journal = {Journal of Dynamic Systems, Measurement and Control}, volume = 123, pages = {35--43}, year = 2001, } @article{Darling:57, author = {D. A. Darling}, journal = {Annals of Mathematical Statistics}, volume = 28, title = {The Kolmogorov-Smirnov, Cramer-von Mises tests}, pages = {823--838}, year = 1957, } @book{Darnell:90, author = {J. E. Darnell}, title = {Molecular Cell Biology}, publisher = {Scientific American Books, New York}, edition = {3rd}, year = 1990, } @unpublished{DARPA:01, author = {DARPA}, title = {{DARPA} Mission Statement}, note = {Available on-line at: ``\texttt{http://www.darpa.mil/}''}, year = 2001, } @unpublished{DARPA:98, author = {DARPA/DSO}, title = {Report entitled ``{D}efense {A}dvanced {R}esearch {P}rojects {A}gency: {T}echnology {T}ransition''}, note = {GPO Item Number 0306, Entry Number 98-04459, available on-line at: ``\texttt{http://www.darpa.mil/body/pdf/transition.pdf}''}, year = 1998, } @unpublished{Defense:01, author = {Department of Defense}, title = {{R}eport of the {S}ecretary of {D}efense to the {P}resident and the {C}ongress}, year = 2001, note = {GPO Item 0306-A-02 (MF). Entry Number 97-06367, available on-line at: ``\texttt{http://www.dtic.mil/execsec/adr2001/adr2001.pdf}''. Also known as the ``Defense Annual Report.'' See Chapter 1, page 1}, } @article{Dehmelt:88, author = {H. Dehmelt}, title = {New Continuous {S}tern-{Ge}rlach effect and a hint of 'the' elementary particle}, journal = {Zeitschrift f\"ur Physik D}, year = 1988, volume = 10, number = 2, pages = {127--34}, } @article{Dehmelt:90, author = {H. Dehmelt}, title = {Experiments with an isolated subatomic particle at rest}, journal = {Reviews of Modern Physics}, year = 1990, volume = 62, number = 3, pages = {525--30}, } @article{DeRisi:96, author = {J. DeRisi and L. Penland and P. O. Brown and M. L. Bittner and P. S. Meltzer and M. Ray and Y. Chen and Y. A. Su and J. M. Trent}, title = {Use of a cDNA microarray to analyse gene expression patterns in human cancer}, journal = {Nature Genetics}, volume = 14, pages = {457--60}, year = 1996, } @book{Deutsch:97, author = {D. Deutsch}, title = {The Fabric of Reality}, publisher = {Penguin Press}, year = 1997, pages = {315}, jasquote = {Knowledge does not come into existence fully formed. It exists only as the result of creative processes, which are step-by-step, evolutionary processes, always starting with a problem and proceeding with tentative new theories, criticism and the elimination of errors to a new and preferable problem-situation. This is how Shakespeare wrote his plays. It is how Einstein discovered his field equations. It is how all of us succeed in solving any problem, large or small, in our lives, or in creating anything of value.} } @article{Dewaal:84, author = {V. J. de Waal and P. Schrijner and R. Llurba}, title = {Simulation and optimization of a {DC SQUID} with finite capacitance}, journal = {Journal of Low Temperature Physics}, year = 1984, volume = 54, number = 3, pages = {215--32}, } @misc{Dirac:00, author = {P. A. M. Dirac}, note = {Attributed to Paul Dirac by Valentine Telegdi in a conversation with the proposer (J.A.S., then a student); University of Chicago, 1976. Similar Dirac quotes appear in \cite{Telegdi:89,Dirac:75}.}, } @inProceedings{Dirac:75, editor = {H. Hora and J. R. Shepanski}, booktitle = {Directions in Physics}, author = {P. A. M. Dirac}, title = {The Development of Quantum Mechanics}, chapter = 1, publisher = {Wiley-Interscience, New York}, year = 1978, pages = {6}, jasnote = {Lectures delivered during a 1975 visit to Australia and New Zealand. "[In the eary days of quantum mechanics\ldots ] It was a good description to say that it was a game, a very interesting game one could play. Whenever one solved one of the little problems, one could write a paper about it. It was very easy in those days for any second-rate physicist to do first-rate work. There has not been such a glorious time since. It is very difficult now for a first-rate physicist to do second-rate work."}, } @article{Dorofeyev:99, author = {I. Dorofeyev and H. Fuchs and G. Wenning and B. Gotsman}, title = {Brownian motion of microscopic solids under the action of fluctuating electromagnetic fields}, journal = {Physical Review Letters}, year = 1999, volume = 83, number = 12, pages = {2402--2405}, jasnote = {Quotes Rytov's book on thermal magnetic noise}, } @article{Dougherty:00, author = {W. M. Dougherty and K. J. Bruland and S. H. Chao and J. L. Garbini and S. E. Jensen and J. A. Sidles}, title = {The {B}loch equations in high-gradient magnetic resonance force microscopy: theory and experiment}, journal = {Journal of Magnetic Resonance}, volume = 143, year = 2000, pages = {106--119}, } @article{Dougherty:96, author = {W. M. Dougherty and K. J. Bruland and J. L. Garbini and J. A. Sidles}, title = {Detection of {AC} Magnetic Signals by Parametric Mode Coupling in a Mechanical Oscillator}, journal = {Measurement Science and Technology}, year = 1996, volume = 7, pages = {1733--39}, } @article{Dougherty:97, author = {W. M. Dougherty and K. J. Bruland and J. L. Garbini and W. M. Leath and J. A. Sidles}, title = {Sensitivity Calculations for Subcellular Spin Imaging by Magnetic Resonance Force Microscopy}, journal = {Cell Vision}, year = 1997, volume = 4, pages = {134--5}, } @article{Drake:89, author = {B. Drake and C. B. Prater and A. L. Weisenhorn and S. A. C. Gould and T. R. Albrecht and C. F. Quate and D. S. Cannell and H. G. Hansma and P. K. Hansma}, title = {Imaging crystal, polymers, and processes in water with the atomic force microscopy}, journal = {Science}, year = 1989, volume = 243, number = 4896, pages = {1586--9}, } @book{Drenth:94, author = {J. Drenth}, title = {Principles of protein X-ray crystallography}, publisher = {Springer-Verlag}, year = 1994, } @article{Driscoll:89a, author = {P. C. Driscoll and G. M. Clore and L. Beress and A. M. Gronenborn}, title = {A proton nuclear magnetic resonance study of the antihypertensive and antiviral protein {BDS-I} from the sea anemone Anemonia sulcata: sequential and stereospecific resonance assignment and secondary structure}, journal = {Biochemistry}, volume = {28(5)}, pages = {2178-97}, year = 1989, } @article{Driscoll:89b, author = {P. C. Driscoll and A. M. Gronenborn and L. Beress and G. M. Clore}, title = {Determination of the three-dimensional solution structure of the antihypertensive and antiviral protein {BDS-I} from the sea anemone Anemonia sulcata: a study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing}, journal = {Biochemistry}, volume = {28(5)}, pages = {2188-98}, year = 1989, } @article{Driscoll:90, author = {R. J. Driscoll and M. G. Youngquist and J. D. Baldeschwieler}, title = {Atomic scale imaging of {DNA} using scanning tunneling microscopy}, journal = {Nature}, year = 1990, volume = 346, number = 6281, pages = {294--6}, } @book{Eaton:91, author = {G. R. Eaton and S. S. Eaton and K. Ohno}, title = {EPR Imaging and In VivoEPR}, edition = {1st}, publisher = {CRC Press, Boca Raton}, year = 1991, note = {See page 294.}, } @inProceedings{Edstam:92, author = {J. Edstam and H. K. Olsson}, editor = {H. Koch and H. L\"ubbig}, title = {Superconducting Devices and Applications}, booktitle = {Springer Proceedings in Physics Vol.}, year = 1992, address = {Berlin}, publisher = {Springer}, pages = {224--7}, } @article{Engel:01, author = {H. A. Engel and P. Recher and D. Loss}, title = {Electron spins in quantum dots for spintronics and quantum computation}, journal = {Solid State Communications}, volume = 119, number = {4--5}, pages = {229--36}, year = 2001, } @ARTICLE{epr, author = "A. Einstein and B. Podolsky and N. Rosen", year = "1935", journal = "Phys.\ Rev.", volume = "47", pages = "777" } @book{Ferreirinho:91, author = {J. Ferreirinho}, title = {The Detection of Gravitational Waves}, publisher = {Cambridge Univ. Press, Cambridge}, year = 1991, } @article{Feynman:48, author = {R. P. Feynman}, title = {Space-Time approach to nonrelativistic quantum mechanics}, journal = {Reviews of Modern Physics}, volume = 20, year = 1948, pages = {367--387}, jasnote = {Section 3 gives the measurement amplitude formalism}, } @article{Feynman:59, author = {R. P. Feynman}, title = {There's plenty of room at the bottom}, journal = {Journal of Microelectromechanical Systems}, year = 1992, volume = 1, number = 1, pages = {60--66}, note = {Transcript of lecture given at the December 1959 American Physical Society annual meeting.}, jasnote = {I put this out as a challenge: Is there no way to make the electron microscope more powerful? [...] Make the microscope one hundred times more powerful, and many problems of biology would be made very much easier.}, } @book{Feynman:65, author = {R. P. Feynman}, title = {The Character of Physical Law}, edition = {paperback}, chapter = {Seeking New Laws}, publisher = {The M.I.T.~Press}, city = {Cambridge, Massachusetts}, year = 1965, pages = {172}, note = {Quoted from Lecture 7: \emph{Seeking New Laws}, page 172.}, jasnote = {Chapter 7, entitled "Seeking New Laws". "We are very lucky to live in an age in which we are still making discoveries. It is like the discovery of America---you only discover it once. The age in which we live is the one in which we are discovering the fundamental laws of nature, and that day will never come again. It is very exciting, it is marvelous, but this excitement will have to go. Of course, in the future there will be other interests. There will be the interest in the connection of one level of phenomena with another---phenomena in biology and so on, or, if you are talking about exploration, exploring other planets, but there will not still be the same things that we are doing now."}, } @article{Feynman:82, author = {R. P. Feynman}, title = {Simulating physics with computers}, journal = {International Journal of Theoretical Physics}, volume = 21, number = {6--7}, pages = {467--488}, year = 1982, } @article{Fink:99, author = {H-W Fink and C. Sch\"onenberger}, title = {Electrical conduction through {DNA} molecules}, journal = {Nature}, volume = 398, pages = {407--410}, year = 1999, } @article{Ford:88, author = {G. W. Ford and J. T. Lewis and R. F. O'Connell}, title = {Quantum {L}angevin equation}, journal = {Physical Review A}, volume = {37(11)}, pages = {4419--28}, year = 1988, jasnote = {See Section V for a discussion of quadratic terms}, } @article{Ford:88b, author = {G. W. Ford and J. T. Lewis and R. F. O'Connell}, title = {Independent oscillator model of a heat bath: exact diagonalization of the {H}amiltonian}, journal = {Journal of Statistical Physics}, volume = 53, pages = {439--455}, year = 1988, } @article{Ford:93, author = {X. L. Li and G. W. Ford and R. F. O'Connell}, title = {Energy balance for a dissipative system}, journal = {Physical Review E}, volume = 48, number = 2, pages = {1547--1549}, year = 1993, jasnote = {See also Senitzsky's critique \cite{Senitzky:95}.}, } @article{Ford:95, author = {X. L. Li and G. W. Ford and R. F. O'Connell}, title = {Reply to ``{C}omment on `{E}nergy balance for a dissipative system{'}\,''}, journal = {Physical Review E}, volume = 51, number = 5, pages = {5169--5171}, year = 1995, jasnote2 = {A reply to Senitzsky's critique \cite{Senitzky:95}.}, jasnote = {see Senitzky:95: ``This is a system wih an infinite number of degrees of freedom, each with its corresponding zero-point oscillation. At absolute zero, this system is in its ground state and, trivially, there is no work done on or by the system. But, for any finite coupling, \emph{no matter how weak}, $H_{\text{spin}}$ does not commute with $H$. Therefore, the ground state of $H$ is not the ground state of $H_{\text{spin}}$ and, even at absolute zero, the oscillator energy must fluctuate.'' equation (14) --- Q is the Q of the oscillator \begin{equation} \expect{H_\text{osc}} = \frac{\hbar \omega_0}{2} + \frac{\hbar\omega_0}{\pi Q} \ln(\omega_c/\omega_0) \end{equation}}, } @book{Fraser:68, author = {D. B. Fraser}, title = {Physical Acoustics Vol. V}, publisher = {Academic, New York}, year = 1968, } @article{Gadsby:96, author = {G. C. Gadsby}, title = {Two-bit anion channel really shapes up}, journal = {Nature}, year = 1996, volume = 383, pages = {295--6}, } @article{Garbini:96, author = {J. L. Garbini and K. J. Bruland and W. M. Dougherty and J. A. Sidles}, title = {Optimal control of force microscope cantilevers. {I}. {C}ontroller Design}, journal = {Journal of Applied Physics}, year = 1996, volume = 80, number = 4, pages = {1951--8}, jasnote = {All MRFM cantilevers are subject to thermal excitation (Brownian Motion) which, if uncontrolled, can be of sufficient amplitude to substantially degrade device sensitivity, or even prevent signal detection altogether. This article describes the theoretical principles and performance of optimal cantilever motion control. As noted in the article: ``The method accounts for inherent noise processes and proactical application of control forces. We show that active feedback control improves cantilever motional stability, enabling instrument designs of much higher sensitivity and faster imaging than passive designs.'' The word `optimal' in the title of this article is appropriate in a mathematically strict sense: for any specified control force, the formalism yields a controller design which optimally stabilizes the cantilever against thermal excitation. This article is the theortical companion to \cite{Bruland:96}}, } @book{Gardiner:00, author = {C. W. Gardiner and P. Zoller}, title = {Quantum Noise}, publisher = {Springer}, edition = {2nd}, year = 2000, jasnote = {See Chapter 8 for photon counting rates, esp 8.2.4-5. "The formula 8.2.5 when evaluated in time-dependent perturbation theory is an average over times much longer than the period of an optical cycle ... There are considerable technical problems with any treatment which does not make use of this approximation." See entry for Lloyd quant-ph/0103006. His equation 3 = Gardiner's equation 8.2.5. Also, see the result for thermal noise P-function, 4.4.48. }, } @book{Gardiner:85, author = {C. W. Gardiner}, title = {Handbook of Stochastic Processes}, publisher = {Springer}, edition = {2nd}, year = 1985, jasnote = {See Ito's formula, equation 4.3.14}, } @book{GardinerWave:00, author = {C. W. Gardiner and P. Zoller}, title = {Quantum Noise}, publisher = {Springer}, edition = {2nd}, year = 2000, note = {see Section 11.3.9}, jasnote = {Wave function simulation reference}, } @article{Genack:73, author = {A. Z. Genack and A. G. Redfield}, title = {Nuclear spin diffusion and its thermodynamic quenching in the field gradients of a type-II superconductor}, journal = {Physical Review Letters}, volume = 31, number = 19, pages = {1204--7}, year = 1973, jasnote = {See also Science magazine article by Redfield, excellent for spin thermodynamics}, } @inCollection{Gilchrist:01, author = {G. W. Gilchrist and J. G. Kingsolver}, title = {Is optimality over the hill? The fitness landscapes of idealized organisms}, booktitle = {Adaptationism and Optimality}, editor = {S. H. Orzack and E. Sober}, publisher = {Cambridge University Press}, pages = {24--44}, year = 2001, jasnote = {Use of historical metaphors in evolutionary theory. See Baum:01, Gilchrist:01,Orzack:01. Natural selection as historical action: "[The] historical view challenges us to decipher the causes of the fixation of a particular state in a particular ancestral lineage." }, } @article{Gould:90, author = {S. A. C. Gould and B. Drake and C. B. Prater and A. L. Weisenhorn and S.Manne and G. L. Kelderman and H. J. Butt and H. Hansma and P. K. Hansma and S. Magonov and H. J. Cantow}, title = {The atomic force microscope: a tool for science and industry.}, journal = {Ultramicroscopy}, year = 1990, volume = 33, number = 2, pages = {93--8}, } @book{Granato:66, author = {A. V.Granato and K. Lucke}, title = {Physical Acoustics Vol. !!! Check!!! IVA}, publisher = {Academic, New York}, year = 1966, } @book{Grandy:00, author = {W. T. Grandy}, title = {Scattering of Waves from Large Spheres}, publisher = {Cambridge University Press}, year = 2000, jasnote = {Good discussion of microsphere resonances, with references ... see Sections 7.6-7.6}, } @book{Guerlac:87, author = {H. E. Guerlac}, title = {Radar in World War {I}{I}}, volume = {I}, page = {69}, chapter = 4, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, jasnote = {It is much too easy, now that we are all fully aware of the immense military value of radar, to assume that its revolutionary significance must have been fully grasped at the beginning, and that the development of a device with such potentialities must have fired the imagination of all persons to whom the idea was disclosed. This was far from being the case. It is an important fact that during the early phases of its development [...] radar encountered a great deal of skepticism not only in the Bureaus, where in certain quarters it amounted to outright antagonism [which] did not evaporate until the feasibility of the equipment had been demonstrated beyond a doubt.}, } @book{Guerlac:87bothV, author = {H. E. Guerlac}, title = {Radar in World War {I}{I}}, volume = {(two volumes)}, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, note = {Julian Schwinger's work is discussed in Volume I (consult index).}, } @book{Guerlac:87b, author = {H. E. Guerlac}, title = {Radar in World War II}, volume = {I}, chapter = 3, page = {27}, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, jasnote = {Radio detection devices using the pulse-echo principle were developed independently and almost simultaneously during the 1930's and 1940's by a majority of the great powers. In 1939 closely guarded secret programs were in various stages of development in Great Britain, France, Germany, Canada, and the United States. Russia, China, Japan, and Italy were at that time without the equipment, and seem to have acquired it after the outbreak of war, by capture and by disclosures from their allies.}, } @inBook{Guerlac:87c, author = {H. E. Guerlac}, title = {Radar in World War II}, volume = {I}, chapter = 3, page = {27--28}, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, note = {See pages 27--28.}, jasnote = {"Such a duplication of effort will surprise only those who cling to a hero theory of scientific progress, and demand for each discovery or development a single putative inventor; or those who are unaware of the frequency---one is tempted to write, the regularity---with which such parallelisms are encountered in modern scientific work." "Clearly, such a striking instance of parallel and independent discovery raises a number of fundamental historical questions. When a real burgeoning takes place we are led to ask what were the conditions which favored it. The main lines of inquiry are obvious. First of all, when a serious effort is put behind a given development, as it was in the case of radar, it is evident that it satisfied a clear and urgent need. Second, since the principle \emph{nihil ex nihilo} applies quite as surely to the history of science as to biology, it is obvious that some key features or central ideas in pure science must have been the point of departure. Lastly, when success is attained, it is obvious that the state of the art, that is, the perfection of engineering skills in this or neighboring fields, must have reached a point where success was fairly well assured."}, } @article{Hacia:96, author = {J. G. Hacia and L. C. Brody and M. S. Chee and S. P. A. Fodor and F. S. Collins}, title = {Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis}, journal = {Nature Genetics}, volume = 14, pages = {441--447}, year = 1996, } @article{Hammel:95, author = {P. C. Hammel and Z. Zhang and G. J. Moore and M. L. Roukes}, title = {Sub-surface imaging with the magnetic resonance force microscope}, journal = {Journal of Low Temperature Physics}, year = 1995, volume = 101, number = 1, pages = {59--69}, jasnote = {This article marks the appearance in print of the third group to independently perform an MRFM experiment, under the auspices of Los Alamos National Laboratory.}, } @article{Hannay:00, author = {J. D. Hannay and R. W. Chantrell and D. Rugar}, title = {Thernal field fluctuations in a magnetic tip: implications for magnetic resonance force microscopy}, journal = {Journal of Applied Physics}, volume = 87, number = 9, year = 2000, pages = {6827--6829}, } @article{Hansma:91, author = {H. G. Hansma and A. L. Weisenhorn and S. A. C. Gould and R. L. Sinsheimer and H. E. Gaub and G. D. Stucky and C. M. Zaremba and P. K. Hansma}, title = {Progress in sequencing deoxyribonucleic acid with an atomic force microscope.}, journal = {Journal of Vacuum Science and Technology B}, year = 1991, volume = 9, number = 2, pages = {1282--4}, } @article{Hansma:93, author = {H. G. Hansma and R. L. Sinsheimer and J. Groppe and T. C. Bruice and V. Elings and G. Gurley and M. Bezanilla and I. A. Mastrangelo and P. V. C. Hough and P. K. Hansma}, title = {Recent advances in atomic force microscopy of {DNA}}, journal = {Scanning}, year = 1993, volume = 15, number = 5, pages = {296--9}, } @article{Harris, author = {C. C. Harris}, title = {p53: At the Crossroads of Molecular Carcinogenesis and Risk Assessment}, journal = {Science}, year = 1993, volume = 262, number = 5142, pages = {1980--2}, } @article{Heisz:87, author = {S. Heisz and G. Hilscer}, title = {The origin of graduated demagnetization curves of {Nd-Fe-B} magnets}, journal = {Journal of Magnetic Materials}, volume = 67, pages = {20-28}, year = 1987, } @article{Henderson:95, author = {R. Henderson}, title = {The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules}, journal = {Quarterly Reviews of Biophysics}, volume = 28, number = 2, pages = {171--193}, year = 1995, jasnotes = {Why were von NeumannÕs and FeynmanÕs hopes not realized? In a 1995 review [3], Henderson concludes that direct molecular observation is unachievable by neutron, electron, or x-ray microscopy because "radiation damage [...] prevents the determination of the structure of a single biological macromolecule at atomic resolution using any kind of microscopy. This is true whether neutrons, electrons, or x-rays are used as the illumination." His analysis encompasses all microscopies that were known in von NeumannÕs and FeynmanÕs day, as well as their modern variants like x-ray and electron holography. It seems ironic that a mundane problem like specimen damage should prove so intractable. Von Neumann and Feynman envisioned that the main challenge would lie in achieving finely focussed beams. But as a number of recent reviews have concluded, the fundamental obstacle is instead the anti-MooreÕs Law scaling of radiation damage: the smaller the object being observed, the more likely it is to be damaged by neutrons, electrons, or x-rays.}, } @misc{Hersh:02, author = {R. Hersh}, journal = {Mathematical Intelligencer}, pages = {74}, howpublished = {Review of \emph{The Math Gene: How Mathematical Numbers Evolved and Why Numbers Are Like Gossip}}, volume = 24, number = 1, year = 2002, jasnote = {We math teachers have accepted the embarrassing, shameful role of ``gate-keepers.'' We're custodians of a narrow opening, through which sqeeze aspirants to the ``degrees'' that are the \emph{sine qua non} of respectability and affluence. ``It's a dirty job, but somebody has to do it.'' It keeps us supported by state legislatures.\\ This seldom-acknowledged reality contradicts the role some, at least, would rather play---to provide more students intellectual challenge and pleasure that they could have enjoyed, and will never know they missed.}, } @article{Hobbs:89, author = {P. Hobbs and D. Abraham and H. Wickramasinghe}, title = {Magnetic force microscopy with 25 nm resolution}, journal = {Applied Physics Letters}, year = 1989, volume = 55, number = 22, pages = {2357--9}, } @article{Hocherl:64, author = {G. H\"ocherl and H. C. Wolf}, title = {Zur konzentrationsabh\"angigkeit der elektronspin-relaxationszeiten von diphenyl-picryl-hydrazyl in fester phase}, journal = {Zeitschrift fur Physik}, volume = 183, pages = {341-351}, year = 1964, } @book{Hoen:94, author = {S. Hoen and O. Z\"uger and C. S. Yannoni and H. J. Mamin and K. Wago and D. Rugar}, title = {Technical Digest of the 1994 Solid State Sensor and Actuator Workshop, Hilton Head, SC}, publisher = {Transducers Research Foundation}, year = 1994, jasnote = {This conference proceedings publication has turned out to be one of the most significant in the history of MRFM. It is a well-established design principle in MRFM \cite{Sidles:95} that the force noise spectral density $S_f$ is given by $S_f = 2 k_B T m/\tau$, where $T$ is the ambient temperature, $k_B$ is Booltzman's constant, $\tau$ is the damping time of the cantilever, and $m$ is the cantilever motional mass. Thus low cantilever mass $m$ is associated with lower noise levels and greater sensitivity. The great design insight of this article is that by far the easiest cantilever dimension to make small, and thus achieve low motional mass, is not the length or width of the cantilever, but rather the thickness, which is under evaporative control. Hoen \emph{et al.} demonstrate that $SiN$ cantilevers of thickness $\sim 400 \AA$ are suitable for MRFM experiments.}, } @book{Home:99, author = {D. Home}, title = {Conceptual Foundations of Quantum Physics: An Overview from Modern Perspectives}, publisher = {Plenum Press}, year = 1999, city = {New York and London}, jasnote = {Good discussion of various perspectives}, } @book{Hooke:1667a, author = {R. Hooke}, title = {Micrographia: or some Physiological Descriptions of Minute Bodies made by Magnifying Glasses with Observations and Inquiries Thereupon}, publisher = {Royal Society of London}, year = 1667, note = {All quotes are from {H}ooke's {P}reface (pages not numbered in the original).}, jasnote = {``The like frailties are to be found in Memory; we often let many things slip away from us, which deserve to be retain'd; and of those which we treasure up, a great part is either frivolous or false; and if good, and substantial, either in tract of time obliterated, or at best to be overwhelmed and buried under more frothy notions, that when there is need of them, they are in vain fought over.''}, } @book{Hooke:1667b, author = {R. Hooke}, title = {Micrographia: or some Physiological Descriptions of Minute Bodies made by Magnifying Glasses with Observations and Inquiries Thereupon}, publisher = {Royal Society of London}, year = 1667, note = {All quotes are from {H}ooke's {P}reface (pages not numbered in the original).}, jasnote = {``By the means of Telescopes, there is nothing so far distant but may be represented to our view; and by the help of microscopes, there is nothing so small, as to escape our inquiry; hence there is a new visible world discovered to the understanding. {\ldots} It seems not improbable, but that by these helps the subtilty of the composition of Bodies, the structure of their parts, the instruments and manner of their inward motions, and all the other possible appearances of things, may come to be more fully discovered [and] we may perhaps be inabled to discern all the secret workings of Nature, almost in the same manner as we do those that are the productions of Art, and are manag'd by Wheels, and Engines, and Springs, that were devised by humane Wit. ''}, } @book{Hooke:1667c, author = {R. Hooke}, title = {Micrographia: or some Physiological Descriptions of Minute Bodies made by Magnifying Glasses with Observations and Inquiries Thereupon}, publisher = {Royal Society of London}, year = 1667, note = {All quotes are from {H}ooke's {P}reface (pages not numbered in the original).}, jasnote = {``The Indeavors of Skilful men have been most conversant about the assistance of the Eye, and many noble Productions have followed upon it; and from hence we may conclude, that there is a way open'd for advancing the operations, not only of all the other Senses, but even of the Eye it self; that which has already been done ought not to content us, but rather to incourage us to proceed further, and to attempt greater things in the same and different wayes. 'Tis not unlikely, but that there may yet be invented several other helps for the eye, as much exceeding those already found, as those do the bare eye, such as by which we may perhaps be able to discover living Creatures in the Moon, or other Planets, the figures of the compounding particles of matter, and the particular Schematicisms and Textures of Bodies.''}, } @article{Hug:99, author = {H.J. Hug and B. Stiefel and P.J.A. van Schendel and A. Moser and S. Martin and H.-J. Guntherodt}, title = {A low temperature ultrahigh vacuum scanning force microscope}, journal = {Review of Scientific Instruments}, volume = 70, number = 9, pages = {3525-40}, year = 2001, } @article{Hutter:93, author = {J. L. Hutter and J. Bechhoefer}, title = {Calibration of atomic-force microscope tips}, journal = {Review of Scientific Instruments}, volume = 64, number = 7, year = 1993, pages = {1868--73}, } @article{Hutter:94, author = {J. L. Hutter and J. Bechhoefer}, title = {Measurement and manipulation of van der Waals forces in atomic force microscopy}, journal = {Journal of Vacuum Science and Technology B}, volume = 12, number = 3, year = 1994, pages = {2251-2253}, } @inCollection{Hyat:76, author = {C. Humphreys}, title = {High voltage electron microscopy}, booktitle = {Principles and Techniques of Scanning Electron Microscopy; Biological Applications}, publisher = {Van Nostrand Reinhold Co.}, year = 1976, pages = {1--39}, editor = {M. A. Hyatt}, } @unpublished{IBM:01, author = {IBM}, title = {{IBM} Mission Statement}, note = {Available on-line at: \\ ``\texttt{http://www.ibm.com/ibm/}''}, year = 2001, } @article{Ilchenck:98, author = {V. S. Ilchenko and P. S. Volikov and V. L. Velichansky and F. Treussart and V. Lefevre-Seguin and J. M. Raimond and S. Haroche}, title = {Strain-tunable High-{Q} optical microsphere resonator}, journal = {Optics Communications}, volume = 145, pages = {86--90}, year = 1998, jasnote = { fused silica microsphere 15 \mu m diameter stem, 160 \mu m diameter sphere, Q 1.1 \times 10^8 (undercoupled), l \sim 2000, finesse = Q/l \sim 5 \times 10^4, lambda = 807 nm }, } @misc{Intel:98, author = {Intel Corporation}, year = 1998, note = {The transistor counts are tabulated at the Intel Online Museum at: ``\texttt{http://www.intel.com/intel/museum/25anniv/hof/tspecs.htm}''. Alternatively, see: ``\texttt{http://einstein.et.tudelft.nl/\~{}offerman/cl.contents2.html}'' }, } @unpublished{Jackiw:01, author = {R. Jackiw and A. Shimony}, title = {The depth and breadth of John Bell's physics}, note = {LANL preprint physics/0105046 (\texttt{http://xxx.lanl.gov})}, jasnote = {In 1960, working at CERN, listed his speciality as ``quantum engineering''. Regarded by colleagues Jackiw and Shimony as a ``facetious'' claim, there is no evidence that Bell's self-description was frivolous}, } @article{Jacobs:95, author = {J. P. Jacobs and W. M. Klipstein and S. K. Lamoreaux and B. R. Heckel and E. N. Fortson}, title = {Limit on the electric-dipole moment of {$\sp{199}\text{Hg}$} using synchronous optical pumping}, journal = {Physical Review A}, volume = 52, number = 5, pages = {3521-3540}, year = 1995, jasnote = {Synchronously driven optically pumped atomic oscillators have been used to measure the electric-dipole moment of /sup 199/Hg as a test of time-reversal symmetry. Our result, d(/sup 199/Hg)<8.7*10/sup -28/e cm, is the smallest experimental limit on the size of an electric-dipole moment and sets stringent bounds on several sources of time-reversal symmetry violation in atomic systems. This article describes the details of the experimental apparatus, the measurement procedure, and the implications of the result for CP violation in elementary particle interactions.}, } @article{Jaekel:90, author = {M.T. Jaekel and S. Reynaud}, title = {Quantum limits in interferometric measurements}, journal = {Europhysics Letters}, year = 1990, volume = 13, pages = {301--306}, jasnote = {Posted in 2001 to quant-ph/ 0101104 v1; possibly the authors felt ignored.}, } @article{Jedema:01, author = {F. J. Jedema and A. T. Filip and B. J. {v}an Wees}, title = {Electrical spin injection and accumulation at room temperature in an all-metal mesoscopic spin valve}, journal = {Nature}, volume = 410, number = 6826, pages = {345--8}, year = 2001, } @article{Kane:98, author = {B. E. Kane}, title = {A silicon-based nuclear spin quantum computer}, journal = {Nature}, volume = 393, pages = {133--137}, year = 1998, jasnote = {B = 2 Tesla}, t = {100 mK}, h = {\gamma_e B\dot s_e -\gamma_n B\dot s^n + A \sigma^e \cdot \sigma^n (Here \gamma_e B and -\gamma_n both positive, A positive per Slichter) \gamma_{\sideset{^{31}{}P}} = g \times 17.2510 MHz/Tesla}, g = {1.13 A/h = 29 MHz,}, } @article{Kent:93, author = {A. D. Kent and T. M. Shaw and S. von Molnar and D. D. Awschalom}, title = {Growth of high aspect ratio nanometer-scale magnets with chemical vapor deposition and scanning tunneling microscopy}, journal = {Science}, year = 1993, volume = 262, number = 5137, pages = {1249--52}, } @article{Ketchen:89, author = {M. B. Ketchen and D. D. Awschalom and W. J. Gallagher and A. W. Kleinsasser and R. L. Sandstrom and J. R. Rozen and B. Bumble}, title = { Design, fabrication, and performance of integrated miniature {SQUID} susceptometers}, journal = {IEEE Transactions on Magnetics}, year = 1989, volume = 25, number = 2, pages = {1212--15}, } @inProceedings{Ketchen:92, author = {M. B. Ketchen}, title = { Design and fabrication considerations for extending integrated {DC-SQUID}s to the deep sub-micron regime}, booktitle = {Springer Proceedings in Physics}, year = 1992, volume = 64, editor = {H. Koch and H. L\"ubbig}, pages = {256--64}, } @article{Ketchen:93, author = {M. Ketchen and D. J. Pearson and K. Stawiasz and C. K. Hu and A. W. Kleinsasser and T. Brunner and C. Cabral and V. Chandrashekhar and M. Jaso and M. Manny and K. Stein}, title = {Octagonal washer {DC SQUID}s and integrated susceptometers fabricated in a planarized sub-$\mu$m {N}b-{A}l{O}$_{x}$-{N}b technology}, journal = {IEEE Transactions on Applied Superconductivity}, year = 1993, volume = 3, number = 1, pages = {1795--9}, } @unpublished{Kimble:00, author = {H. J. Kimble and Y. Levin and A. B. Matsko and K. S. Thorne and S. P. Vyatchanin}, title = {Conversion of conventional gravitational-wave interferometers into QND interferometers by modifying their input and/or output optics}, note = {Preprint gr-qc/0008026 v1}, year = {2000}, jasnote = {Referenced by LIGO document G010201-00-D "The Second Generation LIGO Interferometers" Thorne calls SQL a "Twenty Year Misunderstanding")}, } @article{Kinoshita:96, author = {T. Kinoshita}, title = {The fine structure constant}, journal = {Reports on Progress in Physics}, volume = 59, pages = {1459--1492}, year = 1996, jasnote = { "Thus, in the next few years, we might have at our disposal several independent determinations of $\alpha$ whose precision is better than $10^{-8}, with some possibly pushing $10^{-9}$.}, } @book{Klemens:66, author = {P. G. Klemens}, title = {Physical Acoustics Vol. IIIB}, publisher = {Academic, New York}, year = 1966, } @article{Koch:80, author = {R. H. Koch and D. J. Van Harlington and J. Clarke}, title = { Quantum-noise theory for the resistively shunted {J}osephson junction}, journal = {Physical Review Letters}, year = 1980, volume = 45, number = 26, pages = {2132--5}, } @article{Koch:81, author = {R. H. Koch and D. J. Van Harlington and J. Clarke}, title = {Quantum noise theory for the {DC SQUID}}, journal = {Applied Physics Letters}, year = 1981, volume = 38, number = 5, pages = {380--2}, } @article{Koch:81b, author = {R. H. Koch and D. J. Van Harlington and J. Clarke}, title = { Observation of zero-point fluctuations in a resistively shunted {J}osephson tunnel junction}, journal = {Physical Review Letters}, year = 1981, volume = 47, number = 17, pages = {1216--19}, } @article{Kohler:93, author = {J. Kohler and J. A. J. M. Disselhorst and M. C. J. M Donckers and E. J. J. and Groenen and J. Schmidt and W. E. Moerner}, title = {Magnetic resonance of a single molecular spin}, journal = {Nature}, volume = 363, pages = {242-244}, year = 1993, } @article{Kohler:95, author = {J. Kohler and A. C. J. Brouwerand E. J. J. Groenen and J. Schmidt}, title = {Single molecule electron paramagnetic resonance spectroscopy: hyperfine splitting}, journal = {Science}, volume = 268, pages = {1457-1460}, year = 1995, } @article{Koops:99, author = {K.R. Koops and P.M.L.O. Scholte and W.L. De Koning}, title = {Observation of zero creep in piezoelectric actuators}, journal = {Applied Physics A}, volume = 68, pages = {691--7}, year = 1999, } @book{Kuo:91, author = {B. C. Kuo}, title = {Automatic Control Systems}, edition = {6}, publisher = {Prentice-Hall}, year = 1991, note = {Chapter~3}, jasnote = {page 279, Ch 6 introduction "Generally speaking, an unstable system is considered to be useless."}, } @article{Kupiszewska:92, author = {D. Kupiszewska}, title = {Casimir effect in absorbing media}, journal = {Physical Review A}, volume = {46(5)}, pages = {2286---94}, year = 1992, } @book{Landau:58, author = {L. D. Landau and E. M. Lifshitz}, title = {Quantum Mechanics. Nonrelativistic Theory (Course of Theoretical Physics)}, volume = 3, edition = {1st}, chapter = 5, address = {London}, publisher = {Pergamon Press Ltd.}, year = 1958, jasnote = {Chapter 12 perturbation theory}, } @book{Landau:80a, author = {L. D. Landau and E. M. Lifshitz and L. P. Pitaevskii}, title = {Statistical Physics Part 1, Revised and Enlarged (Course of Theoretical Physics)}, volume = 5, edition = {3rd Edition}, chapter = 12, address = {Oxford}, publisher = {Butterworth-Heineman}, year = 1980, jasnote = {Chapter 12 reviews fluctuations, Section {\S}124 Reviews the fluctuation-dissipation theorem. Chapter XII reviews finite-temperature electromagnetic theory}, } @book{Landau:80aFDtheorem, author = {L. D. Landau and E. M. Lifshitz and L. P. Pitaevskii}, title = {Statistical Physics. Part 1, Revised and Enlarged (Course of Theoretical Physics)}, volume = 5, edition = {3rd}, chapter = {XII:{\S}124}, address = {Oxford}, publisher = {Butterworth-Heineman}, year = 1980, note = {See {S}ection~{\S}124.}, jasnote = {Chapter 12 reviews fluctuations, Section {\S}124 Reviews the fluctuation-dissipation theorem. Chapter XII reviews finite-temperature electromagnetic theory}, } @book{Landau:80b, author = {L. D. Landau and E. M. Lifshitz and L. P. Pitaevskii}, title = {Statistical Physics. Part 2, Theory of the Condensed State (Course of Theoretical Physics)}, volume = 9, edition = {3rd}, chapter = 8, address = {Oxford}, publisher = {Butterworth-Heineman}, year = 1980, jasnote = {Chapter 8 reviews the Casimir effect. Section {\S}72 Reviews the Johnson noise expression, Chapter VII reviews finite-temperature electromagnetic theory}, } @book{Landau:80bJohnsonNoise, author = {L. D. Landau and E. M. Lifshitz and L. P. Pitaevskii}, title = {Statistical Physics. Part 2, Theory of the Condensed State (Course of Theoretical Physics)}, volume = 9, edition = {3rd}, chapter = 8, address = {Oxford}, publisher = {Butterworth-Heineman}, year = 1980, note = {See {S}ection~{\S}72.}, jasnote = {Chapter 8 reviews the Casimir effect. Section {\S}72 Reviews the Johnson noise expression.}, } @book{Landau:86, author = {L. D. Landau and E. M. Lifshitz and L. P. Pitaevskii}, title = {Theory of Elasticity. }, series = {Course of Theoretical Physics}, volume = 7, edition = {3rd}, chapter = {{I}:{\S}9}, address = {Oxford}, publisher = {Pergammon Press}, year = 1986, pages = {26--31}, } @article{Landauer:96, author = {R. Landauer}, title = {Mesoscopic noise: common sense view}, journal = {Physica B}, volume = 227, pages = {156--160}, year = 1996, jasnote = {Noise is of interest as a probe of carrier kinetics which is more sensitive to the Pauli principle and to carrier interactions than the low frequency conductance. We stress simple principles through cases which are easily analyzed, to offset the tendency in the literature toward formal analysis.}, } @article{Landauer:99, author = {Y. Imry and R. Landauer}, title = {Conductance viewed as transmission}, journal = {Reviews of Modern Physics}, volume = 71, number = 2, pages = {306--312}, year = 1999, jasnote = {Electric current flow, in transport theory, has usually been viewed as the response to an applied electric field. Alternatively, current flow can be viewed as a consequence of the injection of carriers at contacts and their probability of reaching the other end. This approach has proven to be particularly useful for the small samples made by modern microelectronic techniques. The approach, some of its results, and related issues are described, but without an attempt to cover all the active subtopics in this field.}, } @article{Landauer:99b, author = {R. Landauer}, title = {Obituary notice}, journal = {Nature}, volume = 400, pages = {720}, year = 1999, jasnote = {This proposal, like all proposals for quantum computation, relies upon speculative technology, does not in its current form take into account all possible sources of noise, unreliability and manufacturing error, and probably will not work.}, } @article{Landweber:51, author = {L. Landweber}, title = {An iteration formula for {F}redholm intergal equations of the first kind.}, journal = {American Journal of Mathematics}, year = 1951, volume = 73, pages = {615-624}, } @article{Lattman:01, author = {E. E. Lattman}, title = {Molecular structures from femtosecond x-ray pulses}, journal = {Proceedings of the National Academy of Sciences}, year = 2001, volume = 98, number = 12, pages = {6635--6636}, jasnote = {See Miao:01, Lattman:01 and Neutze:00 in this database. "A proposal like that of Miao, Hodgson, and Sayre has many imponderables, and could fail in detail at a number of points. [nonetheless] Here at last is a proactive and exciting idea." Sayre evidently a long-time senior partner in this area. Embedded in the Linear Coherent Light Source project, www-ssrl.slac.stanford.edu/lcls/; I found a construction estimate of \$ 100M from a BESAC review.}, } @article{Lauterbur, author = {P. C. Lauterbur}, title = {Image Formation by Induced Local Interactions: Examples Employing Nuclear Magnetic Resonance}, journal = {Nature}, year = 1973, volume = 242, number = 5394, pages = {190--1}, } @misc{Lesk, author = {A. M. Lesk}, journal = {Mathematical Intelligencer}, year = 2001, volume = 23, page = {4}, note = {Letter from {A}rthur {M}.\ {L}esk.}, jasnote = {States the Wigner-Gelfand Principle as asserting "the unreasonable \emph{ineffectiveness} of mathematics in the biological sciences." Dr. Lest also notes famous physicist as saying "You're not doing science, you're just doing archeology!" This attitude (Lesk) "emphasizes a genuine and severe obstacle to applications of mathematics in biology." } } @article{Leskowitz:98, author = {G. M. Leskowitz and L. A. Madsen and D. P. Weitekamp}, title = {Force-detected magnetic resonance without field gradients}, journal = {Solid State Nuclear Magnetic Resonance}, volume = 11, pages = {73-86}, year = 1998, } @article{Li:93, author = {X. L. Li and G. W. Ford and R. F. O'Connell}, title = {Langevin theory of Brownian motion}, journal = {American Journal of Physics}, volume = {61(10)}, pages = {924--9}, year = 1993, } @article{Lieber:98, author = {C. M. Lieber}, title = {One-dimensional nanostructures: chemistry, physics, and applications}, journal = {Solid State Communications}, year = 1998, volume = 107, number = 11, pages = {607--616}, jasnote = {Good review of nanowires}, } @article{Likharev:90, author = {K. K. Likharev}, title = {Progress and prospects of superconductor electronics}, journal = {Superconductor Science and Technology}, year = 1990, volume = 3, number = 7, pages = {325--37}, } @inProceedings{Lincoln, author = {Abraham Lincoln}, title = {Letter to Grant, April 30, 1864}, booktitle = {Collected Works of Abraham Lincoln}, volume = 7, year = 1953, publisher = {Rutgers University Press}, editor = {M. D. Pratt and L. A. Dunlap}, jasquote = { Online: Collected Works of Abraham Lincoln URL: http://www.hti.umich.edu/l/lincoln/ Executive Mansion, Washington, Lieutenant General Grant. April 30, 1864 Not expecting to see you again before the Spring campaign opens, I wish to express, in this way, my entire satisfaction with what you have done up to this time, so far as I understand it. The particulars of your plans I neither know, or seek to know. You are vigilant and self-reliant; and, pleased with this, I wish not to obtrude any constraints or restraints upon you. While I am very anxious that any great disaster, or the capture of our men in great numbers, shall be avoided, I know these points are less likely to escape your attention than they would be mine. If there is anything wanting which is within my power to give, do not fail to let me know it. And now with a brave Army, and a just cause, may God sustain you. Yours very truly A. LINCOLN }, } @inProceedings{Lincoln, author = {Abraham Lincoln}, title = {Letter to Grant, July 13, 1863}, booktitle = {Collected Works of Abraham Lincoln}, volume = 6, year = 1953, publisher = {Rutgers University Press}, editor = {M. D. Pratt and L. A. Dunlap}, jasquote = { Online: Collected Works of Abraham Lincoln URL: http://www.hti.umich.edu/l/lincoln/ Major General Grant Executive Mansion, Washington, July 13, 1863 My dear General I do not remember that you and I ever met personally. I write this now as a grateful acknowledgment for the almost inestimable service you have done the country. I wish to say a word further. When you first reached the vicinity of Vicksburg, I thought you should do, what you finally did---march the troops across the neck, run the batteries with the transports, and thus go below; and I never had any faith, except a general hope that you knew better than I, that the Yazoo Pass expedition, and the like, could succeed. When you got below, and took Port Gibson, Grand Gulf, and vicinity, I thought you should go down the river and join Gen. Banks; and when you turned Northward East of the Big Black, I feared it was a mistake. I now wish to make the personal acknowledgment that you were right, and I was wrong. Yours very truly A. LINCOLN}, } @article{Liu:97, author = {A. Y. Liu and E. Corey and R. L. Vessella and P. W. Lange and L. D. True and FG. M. Huang and P. S. Nelson and L. Hood}, title = {Identification of differentially expressed prostate genes: increased expression of transcription}, journal = {Prostate}, volume = {30(3))}, pages = {145--53}, year = 1997, } @unpublished{Lloyd:01, author = {V. Giovannetti and S. Lloyd and L. Maccone}, title = {Quantum enhanced positioning and clock synchronization}, note = {LANL Preprint quant-ph/0103006 (\texttt{http://xxx.lanl.gov})}, jasnote = {Photon counting formula (eq. 3) may be wrongly applied ... susceptible to test!}, } @article{Lockhart:96, author = {D. J. Lockhart and H. Dong and M. C. Byrne and M. T. Follettie and M. V. Gallo and M. S. Chee and M. Mittmann and C. Wang and M. Kobayashi and H. Horton and E. L. Brown}, title = {Expression monitoring by hybridization to high-Density oligonucleotide arrays}, journal = {Nature Biotechnology}, volume = 14, pages = {1675--1680}, year = 1996, } @article{Lohndorf:00, author = {M. Lohndorf and J. Moreland and P. Kabos}, title = {Ferromagnetic resonance detection with a torsion-mode atomic force microscope}, journal = {Applied Physics Letters}, year = 2000, volume = 76, number = 9, pages = {1176-8}, } @article{Mabuchi:98, author = {H. Mabuchi}, title = {Standard quantum limits for broadband position measurement}, journal = {Physical Review A}, year = 1998, volume = 58, number = 1, pages = {123--127}, jasnote = {Modern update of Caves:87} } @unpublished{MacKenzie:00:01, author = {R. Mac{K}enzie}, title = {Path integral methods and applications}, note = {LANL preprint quant-phys/0004090 v1 (see \texttt{http://xxx.lanl.gov})}, jasnote = {very good on-line introduction and references for path integrals}, } @article{Maia-Neto:93, author = {P. A. Maia-Neto and S. Reynaud}, title = {Dissipative force on a sphere moving in vacuum}, journal = {Physical Review A}, volume = {47(3)}, pages = {1639--46}, year = 1993, } @book{Maimonides, author = {Moses Maimonides}, title = {The guide for the perplexed}, publisher = {Dover Publications}, year = {1956, c1904}, editor = {M. Friedlander}, jasquote = { From the introduction:\\ The object of this treatise is to enlighten a religious man who has been trained to believe in the truth of our holy Law, who conscientiously fulfils his moral and religious duties, and at the same time has been successful in his philosophical studies. Human reason has attracted him to abide within its sphere; and he finds it difficult to accept as correct the teaching based on the literal interpretation of the Law, and especially that which he himself or others derived from those homonymous, metaphorical, or hybrid expressions. Hence he is lost in perplexity and anxiety.\\ Do not imagine that these most difficult problems can be thoroughly understood by any one of us. This is not the case. At times the truth shines so brilliantly that we perceive it as clear as day. Our nature and habit then draw a veil over our perception, and we return to a darkness almost as dense as before. We are like those who, though beholding frequent flashes of lightning, still find themselves in the thickest darkness of the night.\\ I do not presume to think that this treatise settles every doubt in the minds of those who understand it, but I maintain that it settles the greater part of their difficulties. No intelligent man will require and expect that on introducing any subject I shall completely exhaust it; or that on commencing the exposition of a figure I shall fully explain all its parts.\\ Concluding words:\\ God is near to all who call Him, if they call Him in truth, and turn to Him. He is found by every one who seeks Him, if he always goes towards Him, and never goes astray. }, } @article{Malajovich:01, author = {I. Malajovich and J. J. Berry and N. Samarth and D. D. Awschalom}, title = {Persistent sourcing of coherent spins for multifunctional semiconductor spintronics}, journal = {Nature.}, volume = 411, number = 6839, pages = {770--2}, year = 2001, } @article{Mamin:89, author = {H. J. Mamin and D. Rugar and J. E. Stern and R. E. Fontana Jr. and P. Kasiraj}, title = {Magnetic force microscopy of thin Permalloy films}, journal = {Applied Physics Letters}, year = 1989, volume = 55, number = 3, pages = {318--20}, } @book{Mansfield:82, author = {P. Mansfield and P. G. Morris}, title = {NMR Imaging in Biomedicine}, publisher = {Academic Press, New York}, year = 1982, } @article{Marohn:98, author = {J. A. Mahron and R. Fainchtein and D. D. Smith}, title = {An optimal magnetic tip configuration for magnetic resonance force microscopy of microscale buried features}, journal = {Applied Physics Letters}, year = 1998, volume = 73, number = 25, pages = {3778--80}, } @article{Marohn:99, author = {J. A. Mahron and R. Fainchtein and D. D. Smith}, title = {Mechanical modulation of sample magnetization in magnetic resonance force microscopy}, journal = {Journal of Applied Physics}, year = 1999, volume = 86, number = 8, pages = {4619--25}, } @book{Marshall:47, author = {H. Gardner}, title = {Leading Minds: An Anatomy of Leadership}, publisher = {Basic Books, New York}, year = 1995, page = {161}, note = {A complete transcript of Gen.\ Marshall's speech appears in the June 6, 1947 \emph{New York Times}}, jasnote = {It is logical that the United States should do whatever it is able to do to assist in the return of normal economic health in the world, without which there can be no political stability and no peace. Our policy is not directed against any country or doctrine, but against hunger, poverty, desperation, and chaos. Its purpose should be the revival of a working economy in the world so as to permit the emergence of political and social conditions in which free institutions can exist.}, } @article{Marshall:47b, author = {G. C. Marshall}, title = {The {M}arshall {P}lan speech}, journal = {New York Times}, year = 1947, month = {June 6}, note = {{T}he text of this lecture is available at the Marshall Foundation\\ \hspace*{2em}\url{http://www.marshallfoundation.org/marshall_plan_speech_harvard.html}\\ and at the Truman Presidential Museum and Library on-line\\ \hspace*{2em}\url{http://www.trumanlibrary.org/whistlestop/study_collections/marshall/large}\\ as the entry for June 15, 1947. {S}ee also the excellent biography by Cray \cite{Cray:00}.}, } @book{Watson:50, author = {M. S. Watson}, title = {Chief of {S}taff: Prewar Plans and Preparations}, publisher = {Washington, Historical Division, Department of the Army}, year = 1950, note = {{T}ext available on-line at\\ \hspace*{2em}\url{http://www.army.mil/cmh-pg/books/wwii/csppp/index.htm}}, jasnote = {\\ {F}rom the {I}ntroduction: ``{T}he second objective [of this volume] is to help enlarge the thoughtful civilian's concept of national security by describing the basic problems of war and the methods of meeting these problems.''}, } @book{Cray:00, author = {E. Cray}, title = {General of the Army: George C. Marshall, Soldier and Statesman}, publisher = {Norton}, year = 1990, jasquote = {Marshall (page 341): "persuade by accomplishment rather than by eloquence". Compare to Warren Buffett: "Predicting rain doesn't count. Building an ark does." See also Marshall to Eisenhower (also page 341): "When you disagree with my point of view, say so, without an apologetic approach. When you want something you aren't getting, tell me, and I will try to get it for you. I have complete confidence in your management of the affair, and want to support you in every way practicable."}, } @misc{Marshall:53, author = {G. C. Marshall}, title = {Nobel {P}eace {P}rize Lecture}, year = 1953, note = {{T}he text of this lecture is available at the Nobel Foundation\\ \hspace*{2em}\url{http://nobelprize.org/peace/laureates/1953/marshall-lecture.html}\,. \\ The Nobel Committee's introduction concisely summarizes Marshall's life and thought \\ \hspace*{2em}\url{http://nobelprize.org/peace/laureates/1953/press.html}\,. \\ {S}ee also the bibliographic entry for the Marshall Plan speech \cite{Marshall:47b}. Further material may be found at our QSE Group web site \\ \hspace*{2em}\url{http://courses.washington.edu/goodall/MRFM/qse_faq.html}\,\ .}, } @book{Mason:42, author = {W. P. Mason}, title = {Electromechanical Transducers and Wave Filters}, publisher = {Van Nostrand, New York}, year = 1942, } @book{Mason:66, author = {W. P. Mason}, title = {Physical Acoustics Vol. {IIIB}}, publisher = {Academic, New York}, year = 1966, } @article{Mastrangelo:94, author = {I. A. Mastrangelo and M. Bezanilla and P. K. Hansma and P. V. C. Hough and H. G. Hansma}, title = {Structures of large {T} antigen at the origin of SV40 {DNA} replication by atomic force microscopy}, journal = {Biophysical Journal}, year = 1994, volume = 66, number = 2, pages = {293--6}, } @book{McPherson:99, author = {A. McPherson}, title = {Crystallization of Biological Macromolecules}, publisher = {Cold Spring Harbor Laboratory Press}, city = {Cold Spring Harbor, New York}, year = 1999, jasnote = {Good reference on history of crystallization. Call number QD381.M43 1999 in Chemistry Library,} } @inCollection{Mehra:01, author = {J. Mehra}, title = {`The golden age of theoretical physics': {P}.~{A}.~{M}.~{D}irac's scientific work from 1924--1933}, booktitle = {The Golden Age of Theoretical Physics}, volume = 2, pages = {668--705}, publisher = {World Scientific}, year = 2001, } @inCollection{Mehra:72, author = {J. Mehra}, title = {`The golden age of theoretical physics': {P}.~{A}.~{M}.~{D}irac's scientific work from 1924--1933}, booktitle = {Aspects of Quantum Theory}, editor = {A. Salam and E. P. Wigner}, pages = {17--59}, publisher = {Cambridge University Press}, year = 1972, jasnote = {see also \cite{Mehra:01,Dirac:75} for the following quote: `I have the best of reasons for admiring Heisenberg. ... [He] started the golden age of theoretical physics, and for a few years after that it was easy for any second rate student to do first rate work.'}, } @article{Mensky:79a, author = {M. B. Mensky}, title = {Quantum restrictions for continuous measurements of an oscillator}, journal = {Physical Review D}, year = 1979, volume = 20, pages = {384--395}, } @article{Mensky:79b, author = {M. B. Mensky}, title = {Quantum restrictions on the measurement of the parameters of motion of a macroscopic oscillator}, journal = {Soviet Physics-JETP}, year = 1979, volume = {77(4)}, pages = {1326-1339}, jascomment = {first to use Gaussian measurement functions calls this formalism the restricted path integral approach} } @book{Mensky:93, author = {M. B. Mensky}, title = {Continuous Quantum Measurements and Path Integrals}, publisher = {Institute of Physics}, year = 1993, jasnote = {see Section 6.2 and section 6.5, equation 6.25 cites also Caves:80 for the effect of a negative spring constant} } @book{Mensky:2000, author = {M. B. Mensky}, title = {Quantum Measurements and Decoherence: Models and Phenomenology}, publisher = {Kluwer Academic Publishers}, year = 2000, jasnote = {Section 2.5, page 44, "Just as for any actually fundamental theory, radically different approaches to the quantum theory of measurement exist which reflect different aspects of the same phenomenon. Differences in methods, ideology, and language may sometimes create the impression that some of these approaches contradict each other even if they do not."}, } @article{Miao:01, author = {J. Miao and K. O. Hodgson and D. Sayre}, title = {An approach to three-dimensional structures of biomolecules by using single-molecule diffraction images}, journal = {Proceedings of the National Academy of Sciences}, year = 2001, volume = 98, number = 12, pages = {6641--6645}, jasnote = {See Miao:01, Lattman:01 and Neutze:00 in this database. 2.5 Angstrom resolution obtained via: X-ray free-electron laser (XFEL) rubisco protein (2RUS from RCSB data bank) 106,392 Dalton mass, 10^6 copies of molecule, 1.5 Angstrom wavelength, 2.55 x 10^6 photons/Angstrom^2, 10 fs pulse length, 100\% quantum efficiency Major unstated assumption: all 10^6 molecules have identical conformation ... unlikely to be true except for compact globular proteins. Major stated assumption: orientations known}, } @article{Midzor:00, author = {M. M. Midzor and P. E. Wigen and D. Pelekhov and W. Chen and P. C. Hammel and M. L. Roukes}, title = {Imaging Mechanisms of force detected {FMR} microscopy}, journal = {Journal of Applied Physics}, year = 2000, volume = 87, number = 9, pages = {6493--5}, } @book{Milburn:98, author = {G. J. Milburn}, title = {The Feynman processor : quantum entanglement and the computing revolution}, publisher = {Perseus Books}, year = 1998, city = {Reading, Mass.}, } @article{Misra:99, author = {A. Misra and M. F. Hundley and D. Hristova and H. Kung and T. E. Mitchell and M. Nastasi and J. D. Embury}, title = {Electrical resistivity of sputtered Cu/Cr multilayered thin films}, journal = {Journal of Applied Physics}, volume = 85, number = 1, pages = {302--309}, year = 1999, jasnote = {zero-temperature resistivity of 5 nm layer Cu/Cr bilayers was 25 \mu\Omega - cm = 25 10^{-8} Ohm-meter}, } @misc{Moore:97, author = {G. Moore}, title = {An update on {M}oore's {L}aw}, note = {Keynote address, Intel Developer Forum, September 30, 1997, San Francisco. Archived on-line at the Intel Corporation web site: ``\texttt{http://www.intel.com/pressroom/archive/speeches/gem93097.htm}'' }, year = 1997, } @article{Morales:98, author = {A. M. Morales and C. M. Lieber}, title = {A laser ablation method for the synthesis of crystalline semiconductor nanowires}, journal = {Science}, year = 1998, volume = 279, pages = {208--211}, jasnote = {Pure Si and Ge nanowires, diameters 3--20 nm, lengths to 30 micron, sheathed in oxide}, } @article{Moreland:00, author = {J. Moreland and M. Lohndorf and P. Kabos and R. D. Michael}, title = {Ferromagnetic resonance spectroscopy with a micromechanical calorimeter sensor}, journal = {Review of Scientific Instruments}, year = 2000, volume = 71, number = 8, pages = {3099--103}, } @article{Morrow:94, author = {C. D. Morrow and J. Part and J. K. Wakefield}, title = {Viral gene products and replication of the human immunodeficiency type 1 virus}, journal = {American Journal of Physiology}, year = 1994, volume = 266, number = 5, pages = {1135--56}, } @book{Morse:36, author = {P. M. Morse}, title = {Vibration and Sound}, publisher = {McGraw-Hill, New York}, year = 1936, } @book{Morse:53, author = {P. M. Morse and H. Feshbach}, title = {Methods of Theoretical Physics}, publisher = {McGraw-Hill}, city = {New York}, year = 1953, jasnote = {Section \S 1.5 gives Helmholtz's theorem: that any finite vector field that vanishes at infinity can be written \emph{uniquely} as the sum of an irrotational part (the divergence of a scalar potential) and a rotational part (the curl of a vector potential) }, } @book{Morse:53HelmholtzTheorem, author = {P. M. Morse and H. Feshbach}, title = {Methods of Theoretical Physics}, publisher = {McGraw-Hill}, city = {New York}, year = 1953, note = {See chapter 1, section 5}, jasnote = { Helmholtz's theorem: a finite vector field that vanishes at infinity can be written \emph{uniquely} as the sum of an irrotational part (the divergence of a scalar potential) and a rotational part (the curl of a vector potential)}, } @article{Nenonen:96, author = {J. Nenonen and J. Montonen and T. Katila}, title = {Thermal noise in biomagnetic measurements}, journal = {Review of Scientific Instruments}, volume = 67, pages = {2397--2405}, year = 1996, jasnote = {The review of Varpula and Poutanen}, } @article{Neumeister:94, author = {J. M. Neumeister and W. A. Ducker}, title = {Lateral, normal, and longitudinal spring constants of atomic force microscopy cantilevers}, journal = {Review of Scientific Instruments}, year = 1994, volume = 65, number = 8, pages = {2527--31}, } @article{Neutze:00, author = {R. Neutze and R. Wouts and D. van der Spoel and E. Weckert and J. Hajdu}, title = {Potential for biomolecular imaging with femtosecond X-ray pulses}, journal = {Nature}, year = 2000, volume = 406, pages = {752--757}, jasnote = {See Miao:01, Lattman:01 and Neutze:00 in this database. Predicted single-shot single-molecule (lysozyme) resolution of 15 angstroms using 14 keV x-rays (one Angstrom wavelength), 3 x 10^12 photons per 100-nm spot. Conclusion: Should this new femtosecond window in imaging provide a path to high resolution structural information without the need for macroscopic crystals, its impact on structural biology would be tremendous.}, } @unpublished{NIH:01, author = {NIH}, title = {{NIH} Mission Statement}, note = {Available on-line at: \\ ``\texttt{http://www.nih.gov/about/NIHoverview.html}''}, year = 2001, } @misc{NIH:2000, author = {NIH/NIGMS RFA GM-00-006}, title = {Pilot {P}rojects for the {P}rotein {S}tructure {I}nitiative ({S}tructural {G}enomics)}, year = 2000, note = {This RFA states: ``The research projects envisioned \ldots will involve extensive data collection with limited hypothesis-driven aspects. Therefore, they may not be appropriate as research training projects.''}, } @unpublished{NIHMRFM:01, author = {J. A. Sidles and J. L. Garbini}, title = {{NIH} research plan entitled \emph{{I}maging of {M}olecules by {O}scillator-{C}oupled {R}esonance}}, note = {Available on-line at:\\ \texttt{ftp://ftp.u.washington.edu/public/sidles/QUMOD.dir/QUMOD{\_}NIH.pdf} }, year = 2001, } @unpublished{NSF:01, author = {NSF}, title = {{NSF} Mission Statement}, note = {Available on-line at: \\ ``\texttt{http://www.nsf.gov/nsf/nsfpubs/straplan/mission.htm}''}, year = 2001, } @article{Ohno:99, author = {Ohno-Y; Young-DK; Beschoten-B; Matsukura-F; Ohno-H; Awschalom-DD}, title = {Electrical spin injection in a ferromagnetic semiconductor heterostructure}, journal = {Nature}, volume = 402, number = 6736, pages = {790--2}, year = 1999, } @inCollection{Orbach:72, author = {R. Orbach and H. J. Stapleton}, title = {Electron Spin-Lattice Relaxation}, booktitle = {Electron Paramagnetic Resonance}, pages = {121--216}, editor = {S. Geschwind}, publisher = {Plenum Press}, city = {New York-London}, year = 1972, jasnote = {This article give a humility-inducing history of our understanding of spin-lattice relaxation, in which (a) theorists predict low relaxation rates, (b) experimentalists measure much higher relaxation rates, following which (c) theorists improve their theorys (d) experimentalists clean up their experiments, and (e) the cycle begins anew. Theorist: Waller Experiment: Gorter Theorist: Heitler, Teller, and Fierz, Kramers, Kronig, Van Vleck, Dyson, etc, 1932-1972. 146 references! } } @inCollection{Orzack:01, author = {S. H. Orzack and E. Sober}, title = {Introduction}, booktitle = {Adaptationism and Optimality}, editor = {S. H. Orzack and E. Sober}, publisher = {Cambridge University Press}, pages = {1--23}, year = 2001, jasnote = {Wonderful review! See Baum:01, Gilchrist:01,Orzack:01. }, } @article{Pace:93, author = {A. F. Pace and M. J. Collett and D. F. Walls}, title = {Quantum limits in interferometric detection of gravitational radiation}, journal = {Physical Review A}, year = 1993, volume = 47, number = 4, pages = {3173--89}, } @article{Pawley:92, author = {D. C. Joy and J. B. Pawley}, title = {High-resolution scanning electron microscopy}, journal = {Ultramicroscopy}, year = 1992, volume = 47, pages = {80-100}, jasnote = {Nice review of microscopy}, } @article{Peil:99, author = {S. Peil and G. Gabrielse}, title = {Observing the quantum limit of an electron cyclotron: {QND} measurements of quantum jumps between {F}ock states}, journal = {Physical Review Letters}, volume = 83, number = 7, pages = {1287--1290}, year = 1999, jasnote = {Electrons Temperature 80 mK}, field = {{{5.3 Tesla, distance between plates 0.8 cm, thickness 3 mm, OFHC copper material, 13 second spontaneous emission lifetime inhibited from 94 msec expected "The quantum cyclotron is so well prepared in its ground state, and so well insulated from its environment, that it may be possible to excite any desired superposition of excited states, to probe the nature of decoherence and quantum measurement." See also \cite{VanDyck:87} }}}}, @article{Pitcher:90, author = {R. J. Pitcher and K. W. H. Foulds and J. A. Clements and J. M. Naden}, title = {Optothermal drive of silicon resonators: the influence of surface coatings}, journal = {Sensors and Actuators A}, year = 1990, volume = 21, number = 1, pages = {387--90}, } @article{Poncheral:99, author = {P. Poncheral and Z. L. Wang and D. Ugarte and W. A. de Heer}, title = {Electrostatic deflections and electromechanical resonances of carbon nanotubes}, journal = {Science}, volume = 283, pages = {1513--1516}, year = 1999, jasnote = {Carbin nanotubes}, } @article{Porath:00, author = {D. Porath and A. Bezryadin and S. de Vries and C. Dekker}, title = {Direct measurement of electrical transport through {DNA} molecules}, journal = {Nature}, volume = 403, pages = {635--638}, year = 2000, } @article{Povah:01, author = {D. Povah}, title = {Surprise, Initiative, and Battlefield Superiority}, journal = {Army Logistician}, volume = 35, number = {5}, year = 2001, pages = {36--37}, jasnote = {"Army Vision 2010 identifies six patterns of operations that will ensure that Army forces maintain battlefield superiority: project the force, protect the force, shape the battlefield, achieve decisive operations, sustain the force, and gain information dominance." "Linked to protecting the force is information dominance. Information dominance is achieved by information operations. Information operations consist of both offensive and defensive efforts to create a disparity between what the Army knows about the battlespace and operations within it and what the enemy knows about his battlespace. Psychological operations, deception operations, and feints are all used to obtain information dominance. Information dominance is achieved by continued sharing of information among all services, allies, and coalition partners." "In Field Manual (FM) 100Ð5, Operations, surprise is included under ÒThe Foundations of Army OperationsÓ as one of ÒThe Principles of War,"}, } @book{Press:89, author = {W. H. Press and B. P. Flannery and S. A. Teukolsky and W. T. Vetterling}, title = {Numerical Recipes: The Art of Scientific Computing}, publisher = {Cambridge University Press}, year = 1989, edition = {First}, address = {Cambridge}, jasnote = {the classic}, } @book{Press:94, author = {W. H. Press and B. P. Flannery and S. A. Teukolsky and W. T. Vetterling}, title = {Numerical Recipes: The Art of Scientific Computing}, publisher = {Cambridge University Press}, year = 1994, edition = {Second}, address = {Cambridge}, jasnote = {the classic, Section 15.1 for fitting.}, } @article{Puglisi:00, author = {J. D. Puglisi and S. C. Scott and R. Green}, title = {Approaching translation at atomic resolution}, journal = {Nature Structural Biology}, volume = 7, number = 10, page = {855--861}, year = 2000, } @article{Rajagopal:98, author = {A. K. Rajagopal}, title = {The principal of detailed balance and the Lindblad dissipative quantum mechanics}, journal = {Physics Letters A}, year = 1998, volume = 246, pages = {237--241}, jasnote = {Good intro to Lindblad formalism}, } @book{Ramsey:56, author = {N. Ramsey}, title = {Molecular Beams}, publisher = {Clarendon Press, Oxford}, year = 1956, } @article{Rast:00, author = {S. Rast and C. Wattinger and U. Gysin and E. Meyer}, title = {Dynamics of damped cantilevers}, journal = {Review of Scientific Instruments}, year = 2000, volume = 71, number = 7, pages = {2772--5}, jasnote = {Guentherodt's Swiss AFM group}, } @book{Raus:99, author = {G. E. Raus and O. von Natzmer}, title = {The Anvil of War: German Generalship in Defense on the Eastern Front}, publisher = {Greenhill Books}, city = {London}, year = 1994, jasnote = {Combat in pockets, whether it be of long or short duration, has its own fundamental rules. Whatever circumstances may determine the length of the battle, it will always be advisable to seek an early decision. To make this possible, the commander of an encircled force must, on principle, be granted full freedom of action. He should be permitted, specifically, to use his own judgement regarding all measures and decisions incident to a breakout from the pocket. \ldots Whenever a commander receives rigid instructions from a distance at which the capabilities of his encircled forces cannot be properly judged---and are usually overestimated---his willingness to accept responsibility will rapidly decline. \ldots The notion that pockets must be held at all costs must never be applied as a general principle.}, } @inBook{Recorde:1557, author = {R. Recorde}, title = {The Whetstone of Witte}, year = 1557, jasquote={Year 1557, the title page ... "Here if you lift your wittes to whette, Moche sharpenesse therby shall you gette. Dulle wittes hereby doe greatly mende, Sharpe wittes are fined to their fulle ende. Now proue, and praise, as you doe finde, And to your self be not vnkinde." proue: see variant spellings of "approver" in the Oxford English Dictionary, "one who proves, tests, or tries (obs, circa 1400)" } } @article{Rees:93, author = {W. A. Rees and R. W. Keller and J. P. Vesenka and G. Yang and C. Bustamante}, title = {Evidence of {DNA} bending in transcription complexes imaged by scanning force microscopy}, journal = {Science}, year = 1993, volume = 260, number = 5114, pages = {1646--9}, } @book{Reichel:98, author = {L. E. Reichel}, title = {Stochastic Processes in Physics and Chemistry}, publisher = {John Wiley \& Sons}, year = 1998, address = {New York}, pages = {173--279}, jasnote = {Covers basic statistical concepts in Chapters 4 and 5}, } @book{Reichl:98, author = {L. E. Reichl}, title = {A Modern Course in Statistical Physics}, publisher = {Wiley}, year = 1998, } @book{Reitz:67, author = {J. R. Reitz and F. J. Milford}, title = {Foundations of Electromagnetic Theory}, publisher = {Addison-Wesley}, city = {Reading, Massachusetts}, edition = {Second}, year = 1967, jasnote = {See Sections 15.1--15.2 for a discussion of displacement currents}, } @book{Reitz:67Maxwell, author = {J. R. Reitz and F. J. Milford}, title = {Foundations of Electromagnetic Theory}, publisher = {Addison-Wesley}, city = {Reading, Massachusetts}, edition = {Second}, year = 1967, note = {See {C}hapter 15, {S}ections 1--2.}, jasnote = {See Sections 15.1--15.2 for a discussion of displacement currents}, } @inCollection{ridersinthesky:91, author = {D. B. Green}, title = {The Cowboy's A-B-C}, booktitle = {Harmony Ranch}, publisher = {Columbia}, year = 1991, jasnote = {Besides \ldots I can't read.\\ You can't read?\\ No, it's that alphabet ... looks like a bunch of chicken scratchings ... A, M, J Q whew! Well, maybe you just never tried learning it the cowboy way!.}, } @book{Roberts:91, author = {R. L. Roberts and R. G. Kessel and H. Tung}, title = {Freeze Fracture Images of Cells and Tissues}, publisher = {Oxford University Press, Oxford}, year = 1991, } @book{Robinson:85, author = {B. Robinson and H. Thomann and A. H. Beth and P. Fajer and L. Dalton}, title = {EPR and Advanced EPR Studies of Biological Systems}, publisher = {CRC, Boca Raton}, year = 1985, } @article{Robinson:94, author = {B. H. Robinson and D. A. Haas and C. Mailer}, title = {Molecular dynamics in liquids: spin-lattice relaxation of nitroxide spin labels}, journal = {Science}, year = 1994, volume = 263, number = 5146, pages = {490--3}, } @inProceedings{Robinson_3, author = {B. Robinson and H. Thomann and A. H. Beth and P. Fajer and L. Dalton}, editor = {L. R. Dalton}, title = {EPR and Advanced EPR Studies of Biological Systems}, booktitle = {}, year = 1985, address = {Boca Raton}, publisher = {CRC}, pages = {296--301}, } @inProceedings{Roszhart:90, author = {T. V.Roszhart}, title = {The effect of thermoelastic internal friction on the {Q} of micromachined silicon resonators}, booktitle = {IEEE Sensor and Actuator Workshop}, year = 1990, address = {Hilton Head Island, SC}, pages = {13--6}, } @techReport{Rotz:01, author = {L. D. Rotz and D. A. Dotson and I. K. Damon and J. A. Becher}, title = {Vaccinia (smallpox) vaccine: recommendations of the advisory committee on immunization practices (ACIP)}, institution = {Centers for Disease Control and Prevention (CDC)}, year = 2001, journal = {Morbidity and Mortality Weekly Report (MMWR)}, volume = 50, number = {No. RR-10}, jasnote = {A suspected case of smallpox is a public health emergency ... state or local officials should notify CDC immediately at 404-639-2184, 404-639-0385, or 770-488-7100. Currently, specific therapies with proven treatment effectiveness for clinical smallpox are unavailable. Medical care of more severely ill patients would include supportive care only.}, } @article{Rowan:98, author = {S. Rowan and S. M. Twyford and j. Hough and D. H. Gwo and R. Route}, title = {Mechanical losses associated with the technique of hydroxide-catalysis bonding of fused silica}, journal = {Physics Letters A}, year = 1998, volume = 246, pages = {471--478}, jasnote = { % low-loss fused silica bonds using "1/500 molecular % number ratio H20 and KOH (water and lye!) % "The chemical bonding process is % initiated by hydroxide-catalyzed % surface hydration and dehydration % at room temperature." % E.g. Si-O-Si + H_2 O (start configuration) % -> 2 Si-O-H (catalyzed hydration) % -> (different Si pair) Si-O-Si + H_2 O (dehydration) % Maximum bond strength is several weeks, with % strength adequate for handling after "a few hours". }, } @article{Rugar:89, author = {D. Rugar and H. J. Mamin and P. Guethner}, title = {Improved fiber-optic interferometer for atomic force microscopy}, journal = {Applied Physics Letters}, year = 1989, volume = 55, number = 25, pages = {2588--90}, } @article{Rugar:90, author = {D. Rugar and P. Hansma}, title = {Atomic force microscopy}, journal = {Physics Today}, year = 1990, volume = 43, number = 10, pages = {23--30}, } @article{Rugar:91, author = {D. Rugar and P. Gr\"utter}, title = {Mechanical parametric amplification and thermomechanical noise squeezing}, journal = {Physical Review Letters}, year = 1991, volume = 67, number = 6, pages = {699--702}, } @article{Rugar:92, author = {D. Rugar and C. S. Yannoni and J. A. Sidles}, title = {Mechanical detection of magnetic resonance}, journal = {Nature}, year = 1992, volume = 360, number = 6404, pages = {563--6}, jasnote = {The first MRFM experiment ever performed, and arguably the single most significant MRFM article ever published. The sample consisted of $\sim 30$pg of diphenylpicrylhydrazil (an ESR compound) attached to a force microscope cantilever, the modulation method was cyclic saturation of electron spin moments, noise levels were reduced by a frequency-doubling `trick', the detected force was $\sim 10^{-14} Newton$, and the spatial resolution was $\sim 19 \mu \text{m}$. As with every subsequent MRFM experiment, signal and noise were both in good accord with theoretical expectations. The article concludes that ``detection of a single proton \ldots\ should be feasible in an analogous nuclear magnetic resonance experiment'' with the caveat that ``achieving this level of sensitivity and resolution will be a challenge for experimentalists.''}, } @article{Rugar:94, author = {D. Rugar and O. Z\"uger and S. Hoen and C. S. Yannoni and H. M. Vieth and R. D. Kendrick}, title = {Force detection of nuclear magnetic resonance}, journal = {Science}, year = 1994, volume = 264, number = 5165, pages = {1560--3}, jasnote = {This article describes the first MRFM detection of nuclear magnetic resonance (NMR), as contrasted with electron spin resonance (ESR) \cite:{Rugar:92}. As this article notes: ``NMR force detection is considerably more challenging because the magnetic moments of common nuclei are at least 650 times smaller than the moment of the electron.'' The data demonstrated ``a single shot NMR sensitivity [at room temperature] of $1.6 \times 10^{13} protons and a spatial resolution of $2.6 \mu\test{m}$. \ldots\ This spatial resolution is roughly an order of magnitude better than that obtained by conventional NMR imaging.'' In the concluding sentence, the article notes that ``Previous scanning probes---including tunneling, atomic force, and near-field optical microscopies---have so far measured only the electronic properties of the sample Now, we have shown that nuclear magnetism is also accessible.''}, } @book{Rytov:89, author = {S. M. Rytov and Yu. A. Kravtsov and V. I. Tatarskii}, title = {Principles of Statistical Radiophysics}, volume = 3, chapter = 3, publisher = {Springer-Verlag}, year = 1989, city = {Berlin}, jasnote = {Not in our library, chapter 3}, } @article{Saenz:87, author = {J. J. S\'aenz and N. Garcia and P. Gr\"utter and E. Meyer and H. Heinzelmann and R. Weisendanger and L. Rosenthaler and H. R. Hidber and H. J. G\"utherodt}, title = {Observation of magnetic forces by the atomic force microscope}, journal = {Journal of Applied Physics}, year = 1987, volume = 62, number = 10, pages = {4293--5}, } @article{Saibil:00, author = {H. R. Saibil}, title = {Conformational changes studied by cryo-electron microscopy}, journal = {Nature Structural Biology}, volume = 7, number = 9, pages = {711--714}, year = 2000, jasnote = {Good review on single-molecule electron microscopy. Quotes: "Position and orientation parameters must be determined individually by image processing of single particles." "Macromolecules are stabilized in their native, hydrated state, even when they are transferred into \ldots high vacuum." "Many images of a particle preparation must be recorded, since only one or two shots are possible of each molecule to avoid accumulated radiation damage." "Atomic or near-atomic resolution has only been achieved for two-dimensional crystals such as bacteriorhodopsin." This author agrees with Henderson that "For single particle analysis there is a lower limit to the size of the object that can be accurately aligned. In theory a complex as small as 100 kDa can be analyzed, under idealized conditions. The smallest single particle reconstruction by cryo-EM to date has been of a 260 kDa complex."}, } @article{Sambles:84, author = {J. R. Sambles and K. C. Elsom}, title = {The temperature resistance of the electrical resistivity of gold films}, journal = {Solid State Communications}, volume = 52, number = 4, pages = {367-370}, year = 1984, jasnote = {at 4 kelvin on mica, 11 \times 10^{-9} Ohm-meter at 35 nm thick, 7 \times 10^{-9} Ohm-meter at 53 nm thick}, } @article{Schaff:97a, author = {A. Schaff and W. S. Veeman}, title = {Mechanically detected nuclear magnetic resonance image of a multilayer system at normal pressure}, journal = {Applied Physics Letters}, volume = 70, pages = {73-86}, year = 1997, } @article{Schena:95, author = {M. Schena and D. Shalon and R. W. Davis and P. O. Brown}, title = {Quantitative monitoring of gene expression patterns with a complementary DNA microarray}, journal = {Science}, volume = {270(5235)}, pages = {467--70}, year = 1995, } @article{Schertler:93, author = {G. F. Schertler and JC. Villa and R. Henderson}, title = {Projection structure of rhodopsin}, journal = {Nature}, year = 1993, volume = 362, pages = {770-772}, jasnote = {Projection structure by electron microscopy}, } @article{Schor:97, author = {P. W. Schor}, title = {Polynomial-time algorithms for prime factorization and discrete logarithms on a quantum computer}, journal = {SIAM Journal on Computing}, year = 1997, volume = 26, number = 5, pages = {1484--1509}, } @article{Senitzky:95, author = {I. T. Senitzky}, title = {Comment on `{E}nergy balance for a dissipative system'}, journal = {Physical Review E}, volume = 51, number = 5, pages = {5166--5168}, year = 1995, jasnote = {Critique of an article by Li, Ford, and O'Connell \cite{Ford:93}, see also their reply \cite{Ford:95}.}, } @article{Service:96, author = {R. F. Service}, title = {Close-up of a killer}, journal = {Science}, year = 1996, volume = 274, pages = {176--7}, } @article{Shoemaker:96, author = {D. D. Shoemaker and D. A. Lashkari and D. Morris and M. Mittmann and R. W. Davis}, title = {Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy}, journal = {Nature Genetics}, volume = 14, pages = {450--456}, year = 1996, } @article{Sidles:91, author = {J. A. Sidles}, title = {Noninductive detection of single-proton magnetic resonance}, journal = {Applied Physics Letters}, year = 1991, volume = 58, number = 24, pages = {2854--6}, jasnote = {

The techniques described herein might eventually be extended to allow the imaging of biological molecules, and in fact were devised with this goal in mind. Relative to atomic force oscillators described in the literature, the oscillators in Table I are \~100 times smaller in linear dimension, and \~1000 times higher in frequency. It is therefore clear that developing a practical molecular imager would require a substantial effort by many scientists, and that there would be no absolute assurance of success. Nonetheless, present and projected medical needs might justify such an effort. Of the proteins encoded by the AIDS genome, only HIV-l protease has a known three-dimensional structure. Recently, a partial structure for HIV-l reverse transcriptase has also been obtained. The remaining proteins have so far proven refractory to x-ray crystallography. The missing structural information is a significant obstacle to the rational design of drugs and vaccines.

As a faculty member in a school of medicine, the author frequently observes the sequelae to our present lack of knowledge. This letter is offered in the hope that it may eventually contribute to better treatments for intractable disorders.

}, } @article{Sidles:92, author = {J. A. Sidles}, title = {Folded {S}tern-{G}erlach experiment as a means for detecting nuclear magnetic resonance in individual nuclei}, journal = {Physical Review Letters}, year = 1992, volume = 68, number = 8, pages = {1124--7}, jasnote = {This article showed that single spin samples are effectively self-polarizing, by the same quantum mechanism which ensures that the spin polarization measured in a Stern-Gerlach experiment is always $\pm 100\%$. The article notes that ``Oscillator-coupled NMR detection differs substantially from inductive NMR detection, and it is necessary to `unlearn' some conventional wisdom regarding inductive NMR. In oscillator-based detection it is not necessary to polarize samples prior to taking a measurement, nor is it necessary to wait for a period $T_1$ after each measurement for polarization to equilibriate. $\pi/2$ pulses are not required to initiate spin precession, because any initial spin state couples energy into the oscillator.'' These quantum phenomena are essential to planned single-electron and single-nucleon imaging experiments.}, } @article{Sidles:92b, author = {J. A. Sidles and J. L. Garbini and G. P. Drobny}, title = {The theory of oscillator-coupled magnetic resonance with potential applications to molecular imaging}, journal = {Review of Scientific Instruments}, year = 1992, volume = 63, number = 8, pages = {3881--99}, jasnoteb = {Note: the spin-oscillator Hamiltonian discussed in this 1992 article is fully equivalent to the Jaynes-Cummings Hamiltonian of quantum optics. The authors did not recognize this equivalence}, jasnote = {This lengthy article presented the first detailed design analysis of a single-nucleon MRFM imaging device. As requested by reviewers, this article calculated MRFM signal strength by three methods: (1)~spin and cantilever both treated classically, (2)~cantilever treated classically, spin treated quantum mechanically, (3)~a full quantum mechanical analysis of spin and cantilever as a combined quantum system. The three approaches were shown to yield equivalent results (as expected). The effects of spin-spin interactions in target nuclei were calculated quantum mechanically. This article concludes with a detailed numerical simulation of the signal resulting from an atomic-resolution MRFM scan of $C^{13}$ nuclei within an isotopically-labeled CD4 receptor embedded in a cell membrane. See Figure 2 ... wave packet Figure 3 ... Stern-Gerlach splitting Figure 4 ... environmental interactions equation 72 R_flip = \omega_0/Q kT/(16 m \gamma^2 B^2 L^2) L = omega_0/(g gamma)}, } @article{Sidles:93, author = {J. A. Sidles and D. Rugar}, title = {Signal-to-noise ratios in inductive and mechanical detection of magnetic resonance}, journal = {Physical Review Letters}, year = 1993, volume = 70, number = 22, pages = {3506--9}, jasnote = {This brief article ``compares the sensitivity of inductive and mechanical methods for detecting magnetic resonance'' and concludes that ``as mechanical oscillators are made smaller, their ability to detect magnetic resonance signals improves, such that existing force microscope cantilevers provide a viable alternative to inductive methods for detecting magnetic resonance.'' The essential argument is inductive detection devices work worse as they are made smaller, which MRFM devices work better, which is why microscale MRFM devices can in principle achieve single spin detection and imaging.}, } @inProceedings{Sidles:94, author = {J. A. Sidles and J. L. Garbini}, editor = {M. Sarikaya and H. K. Wickramasinghe and M. J. Isaacson}, title = {Challenges and opportunities in magnetic resonance force microscopy}, booktitle = {Determining Nanoscale Physical Properties of Materials by Microscopy and Spectroscopy. Symposium. 29 Nov.-3 Dec. 1993}, year = 1994, address = {Boston, MA, USA}, publisher = {Mater. Res. Soc. Pittsburgh, PA, USA}, pages = {25--42}, jasnote = {This conference proceedings discusses the technical problems attendant to single spin detection. More complete coverage of this same material is presented in our subsequent 1995 \emph{Rev.\ Mod.\ Phys.\ }article \cite[\emph{op. cit.}]{Sidles:95}}, } @article{Sidles:95, author = {J. A. Sidles and J. L. Garbini and K. J. Bruland and D. Rugar and O. Z\"uger and S. Hoen and C. S. Yannoni}, title = {Magnetic Resonance Force Microscopy}, journal = {Reviews of Modern Physics}, year = 1995, volume = 67, number = 1, pages = {249--265}, jasnote = {This is the first review article ever published on magnetic resonance force microscopy. By the proposer's deliberate intent, it is organized as two articles in one: an outer nontechnical `wrapper' describing the biomedical context of MRFM (Sections I-II and X-XI) surrounding an inner technical core (Sections III-X) that gives a reasonably comprehensive set of expressions for computing signal and noise levels in a broad class of MRFM experiments. The central theme of the review is the feasibility in principle of detecting single electron moments by a concatenation of already-existing technologies.}, } @misc{Sidles:96xxx, author = {J. A. Sidles}, title = {The {A}{C} Stark, {S}tern-{G}erlach, and Quantum {Z}eno Effects in Interferometric Qubit Readout}, note = {prerint at \url{quant-ph/9612001}}, } @book{Slichter:89, author = {C. P. Slichter}, title = {Principles of Magnetic Resonance}, edition = {3rd}, publisher = {Springer, New York}, year = 1989, } @book{Smythe:68, author = {W. R. Smythe}, title = {Static and Dynamic Electricity}, edition = {3rd}, publisher = {McGraw-Hill, New York}, year = 1968, pages = {339--40}, } @article{Stowe:97, author = {T. D. Stowe and K. Yasumura and T. W. Kenny and D. Botkin and K. Wago and D. Rugar}, title = {Attonewton force detection using ultrathin silicon cantilevers}, journal = {Applied Physics Letters}, volume = 71, pages = {288-290}, year = 1997, } @article{Stowe:99, author = {T. D. Stowe and T. W. Kenny and D. J. Thomson and D. Rugar}, title = {Silicon dopant imaging by dissipation force microscopy}, journal = {Applied Physics Letters}, year = 1999, volume = 75, number = 18, pages = {2785--7}, jasnote = {An application we have proposed for MRFM. 150 nm resolution at 10E-14 -- 10E-18 /cc dopant concentration.}, } @article{Streckeisen:98, author = {P. Streckeisen and S. Rast and C. Wattinger and E. Meyer and P. Vettinger and C. Gerber and H. J. G\"untherodt}, title = {Intrumental aspects of magnetic resonance force microscopy}, journal = {Applied Physics A}, year = 1998, volume = 66, pages = {S341--4}, } @article{Stuart:95, author = {D. Stuart}, title = {Docking Mission Accomplished}, journal = {Nature}, year = 1994, volume = 371, number = 6492, pages = {19--2}, } @conference{Suh:96, author = {T. Stowe and K. Yasumura and T. Kenny and D. Botkin and K. Wago and D. Rugar}, title = {Ultrasensitive vertical force probe for magnetic resonance force microscopy}, booktitle = {Technical Digest. Solid-State Sensor and Actuator Workshop. Transducer Research Foundation, Cleveland Heights, OH, USA}, year = 1996, pages = {225--30}, } @article{Suh:98, author = {B. J. Suh and P. C. Hammel and Z. Zhang and M. M. Midzor and M. L. Roukes and J. R. Childress}, title = {Ferromagnetic resonance imaging of {C}o films using magnetic resonance force microscopy}, journal = {Journal of Vacuum Science and Technology B}, year = 1998, volume = 16, number = 4, pages = {2275--9}, } @inProceedings{Telegdi:89, editor = {L. M. Brown and M. Dresden and L. Hoddeson}, booktitle = {Pions to Quarks, Particle Experiments in the 1950s}, author = {V. L. Telegdi}, title = {Early experiments leading to the {V}-{A} interaction}, chapter = 32, publisher = {Cambridge University Press}, city = {New York, New York}, year = 1989, pages = {481}, note = {Here Telegdi quotes Dirac as follows: ``It was a time when average people could make outstanding contributions''.}, } @article{Townes:57, author = {J. A. Giordmaine and L. E. Alsop and F. R. Nash and C. H. Townes}, title = {Paramagnetic relaxation at very low temperatures}, journal = {Physical Review}, year = 1957, volume = 109, number = 2, pages = {302--311}, } @article{Turkevich:72, author = {J. Turkevich and J. Soria and M. Che}, title = {Localization of energy in organic molecules as revealed by dynamic nuclear polarization in diphenylpicrlhydrazyl in polystyrene}, journal = {Journal of Chemical Physics}, volume = 56, pages = {1463-1466}, year = 1972, } @article{VanDyck:87, author = {R. S. Van Dyck Jr. and P. B. Schwinbert and H. G. Dehmelt}, title = {New high-precision comparison of electron and positron $g$ factors}, journal = {Physical Review Letters}, volume = 59, number = 1, pages = {26--29}, year = 1987, jasnote = { the measured anomaly is g-2 = 1 159 652 188.4 (4.3) \times 10^{-12}. see also \cite{Peil:99}}, } @unpublished{vanenck:01, author = {S. J. van Enck and C. A. Fuchs}, title = {The quantum state of an ideal propagating laser field}, note = {\url{quant-ph/0104036 v3}, to appear in {P}hysical {R}eview {L}etters}, jasnote = {good review of the quantum state of a propating laser field.}, } @book{vanKampen:92, author = {N. G. van Kampen}, title = {Stochastic Processes in Physics and Chemistry}, publisher = {Elsevier}, year = 1992, address = {New York}, pages = {83--86}, jasnote = {covers Ornstein-Uhlenbeck Processes and Doob's Theorem}, } @article{Varpula:84, author = {T. Varpula and T. Poutanen}, title = {Magnetic field fluctuations arising from thermal motion of electric charge in conductors}, journal = {Journal of Applied Physics}, volume = 55, pages = {4015--4021}, year = 1984, jasnote = {The classic article on thermal magnetic noise}, } @inProceedings{vonNeumann:46, author = {J. von Neumann}, editor = {V. Mandrekar and P. R. Masani}, title = {Letter to {N}orbert {W}iener from {J}ohn von {N}eumann}, booktitle = {Proceedings of the Norbert Wiener Centenary Congress, 1994}, series = {Proceedings of Symposia in Applied Mathematics}, volume = 52, year = 1997, publisher = {American Mathematical Society, Providence, RI}, pages = {506--512}, jasnote = {[Irving] Langmuir asserts that a 2Ð4 year effort with strong financial backing should break the back of the problem [of observing molecular structure]. His idea of an attack is: very high precision x-ray analysis, Fourier transformation with very massive fast computing, in combination with various chemical substitution techniques to vary the x-ray pattern. In addition, there is no telling what really advanced electron-microscopic techniques will do. In fact, I suspect that the main possibilities lie in that direction. [...] Of course, everybody knows what one Angstrom resolution would mean: one could "look" at an H atom. And with a little more, say 1/5 Angstrom, one could "see" the Schroedinger-like cloud of the orbital electrons. But the physiological implications are even more extraordinary, and they should receive a great deal of emphasis in the immediate future.}, } @inCollection{vonNeumann:54, author = {J. von Neumann}, title = {The N.O.R.C.~and Problems in High Speed Computing}, booktitle = {John von Neumann Collected Works}, editor = {A. H. Taub}, volume = {5}, page = {238--247}, publisher = {Pergamon Press}, year = 1954, jasnote = {NORC = IBM Naval Ordnance Research Calculator; verbatim text: "Those of you present who have lived with this field, and who have lived with and suffered with computing machines of various sorts, and know what kind of regime it is to invest in one, I'm sure have appreciated the fact that it appears that this machine has been completely assembled less than two months ago, has been run on problems less than two weeks ago, and yesterday already ran for four hours without making a mistake. Those of you who have *not* been exposed to computing machines, and who do not have the desolate feeling which goes with living with their mistakes, will appreciate what it means that a computing machine, after about two weeks of breaking in, has really a faultless run of four hours. It is completely fantastic on an object of this size; I doubt it has ever been achieved before, and it is an enormous reassurance regarding the state of the art and regarding the complexities to which one will be able to go in the future, that this has been achieved." } } @article{Waag:01, author = {A. Waag and Th. Gruber and G. Reuscher and R. Fiederling and W. Ossau and G. Schmidt-G and L. W. Molenkamp}, title = {Spin manipulation using magnetic {II}-{VI} semiconductors}, journal = {Journal of Superconductivity}, volume = 14, number = 2, pages = {291--8}, year = 2001, } @article{Wago:96, author = {K. Wago and O. Z\"uger and R. Kendrick and C. S. Yannoni and D. Rugar}, title = {Low-temperature magnetic resonance force detection}, journal = {Journal of Vacuum Science and Technology B}, year = 1996, volume = 14, number = 2, pages = {1197--201}, jasnote = {This article describes the first cryogenic MRFM device, and explicitly demonstrates the theoretically predicted low-noise advantages of operating at cryogenic temperatures.}, } @article{Wago:97, author = {K. Wago and O. Zuger and J. Wegener and R. Kendrick and C. S. Yannoni and D. Rugar}, title = {Magnetic resonance force detection and spectroscopy of electron spins in phosphorus-doped silicon}, journal = {Review of Scientific Instruments}, year = 1997, volume = 68, number = 4, pages = {1823--6}, } @article{Wago:98a, author = {K. Wago and D. Botkin and C. S. Yannoni and D. Rugar}, title = {Paramagnetic and ferromagnetic resonance imaging with a tip-on-cantilever magnetic resonance force microscope}, journal = {Applied Physics Letters}, year = 1998, volume = 72, number = 21, pages = {2757--9}, } @article{Wago:98b, author = {K. Wago and D. Botkin and C. S. Yannoni and D. Rugar}, title = {Force-detected electron-spin resonance: adiabatic inversion, nutation, and spin echo}, journal = {Physical Review B: Condensed Matter}, volume = 57, pages = {1108-1114}, year = 1998, } @article{Weisenhorn:90, author = {A. L. Weisenhorn and B. Drake and C. B. Prater and S. A. C. Gould and P. K. Hansma and F. Ohnesorge and M. Egger and S. P. Heyn and H. E. Gaub}, title = {Immobilized proteins in buffer imaged at molecular resolution by atomic force microscopy}, journal = {Biophysical Journal}, year = 1990, volume = 58, number = 5, pages = {1251--8}, } @article{Weiss:95, author = {D. S. Weiss and V. Sandoghdar and V. Lefevre-Seguin and J.-M. Raimond and S. Haroche}, title = {Splitting of high-{Q} Mie modes induced by light backscattering in silica microspheres}, journal = {Optics Letters}, volume = 20, number = 18, pages = {1835--1837}, year = 1995, jasnote = {silica microspheres 40-300 micrometer in diameter, backscattering intensity 10^-10 per round trip, linewidth 270 kHz, Q values in excess of 10^8}, } @article{Welsch:99, author = {D{.}-G{.} Welsch and W. Vogel and T. Opatrn\'{y}}, title = {Homodyne detection and quantum-state reconstruction}, journal = {Progress in Optics}, volume = 34, pages = {65--200}, year = 1999, jasnote = {Keywords: light, quantum, detection, photon, photomultiplier. Very good references relating to the theory of interferometric detection.}, } @book{Widder:41, author = {D. V. Widder}, title = {The {L}aplace Transform}, publisher = {Princeton University Press}, city = {Princeton, New Jersey}, year = 1941, jasnote = {Chapter VII discusses Stieltjies transforms.}, } @book{Wilson:98, author = {E. O. Wilson}, title = {Consilience: the Unity of Knowledge}, publisher = {Random House}, year = 1998, } @MISC{witten2001, author = "Edward Witten", eprint = "hep-th/0106109" } @article{Wolf:00a, author = {S. A. Wolf and D. Treger}, title = {Spintronics: a new paradigm for electronics for the new millennium}, journal = {IEEE Transactions on Magnetics}, volume = 36, number = 5, pages = {2748--51}, year = 2000, } @article{Wolf:00b, author = {S. A. Wolf}, title = {Spintronics, electronics for the next millenium?}, journal = {Journal-of-Superconductivity}, volume = 13, number = 2, pages = {195--9}, year = 2000, } @article{Wootters:82, author = {W. K. Wootters and W. H. Zurek}, title = {A single quantum cannot be cloned}, journal = {Nature}, year = 1982, volume = 299, number = 5886, pages = {802--3}, } @article{Zurek:03, author = {W. H. Zurek}, title = {Decoherence, einselection , and the quantum origins of the classical}, journal = {Reviews of Modern Physics}, volume = 75, number = 3, pages = {715--75}, year = 2003, } @article{Wrachtrup:93, author = {J. Wrachtrup and C. von Borczyskowski and J. Bernardand and M. Orrit and R. Brown}, title = {Optical detection of magnetic resonance in a single molecule}, journal = {Nature}, volume = 263, pages = {244-245}, year = 1993, } @unpublished{Wu:00, author = {C. H. Wu and L. H. Ford}, title = {Quantum fluctuations of radiation pressure}, note = {LANL preprint quant-ph/0012144 (\texttt{http://xxx.lanl.gov})}, jasnote = {Agrees with Caves et al., using stress-tensor formalism}, } @book{Wyckoff:49, author = {R. W. G. Wyckoff}, title = {Electron Microscopy, Technique and Applications}, publisher = {Interscience Publishers}, address = {New York}, year = 1949, page = {79}, } @inCollection{Yannoni:95, author = {C. S. Yannoni and O. Z\"uger and J. A. Sidles and D. Rugar}, title = {Magnetic Resonance Force Microscopy}, booktitle = {Encyclopedia for Magnetic Resonance}, editor = {D. M. Grant and R. K. Harris}, publisher = {John Wiley and Sons Ltd., Sussex}, year = 1995, jasnote = {The invitation to submit an article for inclusion in the prestigious and comprehensive \emph{Encyclopedia for Magnetic Resonance} was a sign that MRFM had `arrived' as a recognized and respected subdiscipline in magnetic resonance.}, } @article{Yannoni:95b, author = {C. S. Yannoni and O. Z\"uger and K. Wago and S. Hoen and H. M. Vieth and D. Rugar}, title = {Magnetic resonance force microscopy: recent results}, journal = {Brazilian Journal of Physics}, year = 1995, volume = 25, number = 4, pages = {417--25}, } @article{Yasumura:00, author = {K. Yasumura and T. D. Stowe and E. M. Chow and T. Pfaff and T. W. Kenny and B. C. Stipe and D. Rugar}, title = {Quality factors in micron- and submicron-thick cantilevers}, journal = {Journal of Microelectromechanical Systems}, year = 2000, volume = 9, number = 1, pages = {117--25}, } @conference{Yasumura:98, author = {K. Yasumura and T. D. Stowe and E. M. Chow and T. Pfaff and T. W. Kenny and D. Rugar}, title = {A study of microcantilever quality factor}, booktitle = {Technical Digest. Solid-State Sensor and Actuator Workshop. Transducer Research Foundation, Cleveland Heights, OH, USA}, year = 1998, pages = {65--70}, } @article{Youngquist:91, author = {M. G. Youngquist and R. J. Driscoll and T. R. Coley and W. A. Goddard and J. D. Baldeschwieler}, title = {Scanning tunneling microscopy of {DNA}: atom-resolved imaging, general observations and possible contrast mechanism}, journal = {Journal of Vacuum Science and Technology B}, year = 1991, volume = 9, number = 2, pages = {1304--8}, } @article{Zhang:96a, author = {Z. Zhang and P. C. Hammel and G. J. Moore}, title = {Application of a novel {RF} coil design to the magnetic resonance force microscope}, journal = {Review of Scientific Instruments}, year = 1996, volume = 67, number = 2, pages = {3307--9}, } @article{Zhang:96b, author = {Z. Zhang and P. C. Hammel and P. E. Wigen}, title = {Observation of ferromagnetic resonance in a microscopic sample using magnetic resonance force microscopy}, journal = {Applied Physics Letters}, year = 1996, volume = 68, number = 14, pages = {2005--7}, jasnote = {This article demonstrated an entirely new form of MRFM, in which the detected signal is not electron spin resonance (ESR) \cite{Rugar:92}, nor nuclear magnetic resonance (NMR) \cite{Rugar:94}, but rather ferromagnetic resonance (FMR). The theoretical possibility of FMRFM had previously been forseen \cite{Sidles:1995}; this was the first experiment to demonstrate it.}, } @article{Zhang:97, author = {Z. Zhang and P. C. Hammel}, title = {Magnetic resonance force microscopy with a permanent magnet on the cantilever}, journal = {IEEE transactions on Magnetics}, year = 1997, volume = 33, number = 5, pages = {4147--9}, } @article{Zhang:98a, author = {Z. Zhang and P. C. Hammel and M. Mizdor and M. L. Roukes and J. R. Childress}, title = {Ferromagnetic resonace force microscopy on microscopic single layer films}, journal = {Applied Physics Letters}, year = 1998, volume = 73, number = 14, pages = {2036--8}, } @article{Zhang:98b, author = {Z. Zhang and P. C. Hammel}, title = {Magnetic resonance force microscopy with a ferromagnetic tip mounted on the force detector}, journal = {Solid State Nuclear Magnetic Resonance}, year = 1998, volume = 11, number = {1-2}, pages = {65--72}, } @article{Zuger:93, author = {O. Z\"uger and D. Rugar}, title = {First images from a magnetic resonance force microscope}, journal = {Applied Physics Letters}, year = 1993, volume = 63, number = 18, pages = {2496--8}, jasnote = {The first detection of an ESR MRFM signal \cite{Rugar:92} was swiftly followed by the first image reconstructions, as reported in this article. This article demonstrated that fourier transform techniques similar to those applied in medical magnetic resonance imaging suffice to reconstruct three-dimensional images.}, } @article{Zuger:94, author = {O. Z\"ugar and D. Rugar}, title = {Magnetic resonance detection and imaging using force microscope techniques}, journal = {Journal of Applied Physics}, year = 1994, volume = 75, number = 10, pages = {6211--16}, jasnote = {This invited article described the status of MRFM imaging technology in greater detail than \cite{Rugar:92}, and concluded that ``Although we don't yet know what sensitivity and resolution can ultimately be achieved, it is clear that we are far from the theoretical and technological limits of this new technology.''}, } @article{Zuger:96, author = {O. Z\"uger and S. T. Hoen and C. S. Yannoni and D. Rugar}, title = {Three-dimensional imaging with a nuclear magnetic resonance force microscope}, journal = {Journal of Applied Physics}, year = 1996, volume = 79, number = 4, pages = {1881--4}, jasnote = {This article builds on \cite{Zuger:93} and \cite{Rugar:94}, and explicitly demonstrates that three-dimensional imaging of nuclear spins is possible in the context of MRFM.}, } @article{Beylkin:02, author = {G. Beylkin and M. J. Mohlenkamp}, title = {Numerical operator calculus in higher dimensions}, journal = {Proceedings of the National Academy of Science}, year = 2002, volume = 99, number = 16, pages = {10246--10251}, jasnote = {Gregory Beylkin and Martin J. Mohlenkamp quotes: (page 10246) In almost all problems that arise from physics there is an underlying physical dimension, and in almost every case the algorithm to solve the problem will have a computational complexity that grows exponentially in the physical dimension. {\ldots} (page 10246) In this paper we present an approach that, in several important cases, allows one-dimensional algorithms to be extended to $d$ dimensions without their computational complexity growing exponentially in $d$. {\ldots} In higher dimensions, such as those arising from the multiparticle Schr\"{o}edinger equation {\ldots} our approach makes algorithms feasible that would be unthinkable in a traditional approach. (page 10246) Instead of trying to find a $d$-dimensional function that solves the given equation (\emph{e.g.}, the multiparticle Schr\"{o}edinger equation), one only considers functions that can be represented as a product. (page 10246) The contribution of this paper is twofold. First, we present a computational paradigm. With hindsight it is very natural, but this perspective was the most difficult part to achieve, and it has far-reaching consequences. Second, we start the development of a theory that demonstrates that separation ranks are low for many problems of interest. (page 10247) In this paper we prove that both the multiparticle Schr\"{o}edinger operator and the inverse Laplacian can be represented with separation rank $r \mathcal{O}(\log d)$. We feel strongly that the class of operators with low separation rank is much wider than we can demonstrate at present. }, } @article{Mohlenkamp:05, author = {M. J. Mohlenkamp and L. Monz\'{o}n}, title = {Trigonometric identities and sums of separable functions}, journal = {Mathematical Intelligencer}, year = 2005, volume = 27, number = 2, pages = {65--69}, jasnote = {Martin J. Mohlenkamp and Lucas Monz\'{o}n quote: "Modern computers have made commonplace many calculations that were impossible to imagine a few years ago. Still, when you face a problem with a high physical dimension, you immediately encounter the \emph{Curse of Dimensionality}. This curse is that the amount of computing power that you need grows exponentially with dimension. {\ldots} Thus, even small problems in high dimensions are still unreasonably expensive."}, } @article{Silbum:05, author = {H. O. Silbum}, title = {Response to comments on ``What Kind of Science is Experimental Physics''}, journal = {Science}, year = 2005, volume = 308, pages = {201}, month = {April 8}, jasquote = {``Methodologically speaking [by around 1900], experimental physicists had become inventors in the engineering sense. Therefore ... experimental physicists were no longer mere `observers of nature' but inventors engaged in the creation of `artificial experiments{'}''.}, } @article{Trautmann:82, author = {J. Trautmann}, title = {The wonders of literature in medical education}, journal = {Mobius}, year = 1982, volume = 2, number = 3, pages = {23-31}, jasnote = {Joanne Trautmann: "A fully imagined world is far richer than our own."}, } @article{Osterhelm:05, author = {M. T. Osterhelm}, title = {Preparing for the Next Pandemic}, journal = {New England Journal of Medicine}, year = 2005, pages = {1839--1842}, volume = 352, number = 18, jasnote = {What if the next pandemic were to start tonight? If it were determined that several cities in Vietnam had major outbreaks of H5N1 [avian influenza] infection associated with high mortality, there would be a scramble to stop the virus from entering other countries by greatly reducing or even prohibiting foreign travel and trade. The global economy would come to a halt, and since we could not expect appropriate vaccines to be available for many months, and we have very limited stockpiles of antiviral drugs, we would be facing a 1918-like scenario. [...] The loss of human life even in a mild pandemic will be devastating, and the cost of a world economy in shambles for several years can only be imagined.}, } @inCollection{Belzig:05, author = {W. Belzig}, title = {Full Counting Statistics in Quantum Contacts}, booktitle = {CFN Lectures on Functional Nanostructures}, publisher = {Springer}, year = 2005, volume = 1, pages = {123--141}, jasnote = {Broad discussion of counting statistics, references book \emph{Quantum Noise in Mesoscopic Physics}}, } @inCollection{Knuth:92, author = {D. E. Knuth}, booktitle = {Literate Programming}, publisher = {Center for the Study of Language and Information (Stanford)}, title = {Computer Programming as an Art}, year = 1992, jasnote = {pp. 10 "One rather curious thing I've noticed about {\ae}sthetic satisfaction is that our pleasure is significantly enhanced when we accomplish something with limited tools." "Sometimes a programmer is called upon to be more of a craftsman than an artist' and a craftsman's work is quite enjoyable when good tools and materials are present." "Please give us tools that are a pleasure to use, especially for our routine assignments, instead of providing something we have to fight against. Please, give us tools that encourage us to write better programs, by enhancing our pleasure when we do so."}, } @article{Mank:05, author = {B. C. Mank}, title = {Standing and Global Warming: Is Injury to All Injury to None?}, journal = {Environmental Law}, year = 2005, volume = 35, number = 1, pages = {1--84}, } @article{Knuth:89, author = {D. E. Knuth}, title = {The errors of {T}e{X}}, journal = {Software--Practice and Experience}, volume = 19, pages = {607-685}, year = 1989, note = {{R}eprinted with additions in \emph{Literate Programming}, 1992, Stanford, California, pp{.} 243--339. 916 errors!}, } @book{Yablon:05, author = {A. D. Yablon}, title = {Optical Fiber Fusion Splicing}, publisher = {Springer}, year = 2005, jasnote = {Good sections on optical fiber stripping and cleaving, especially role of tension. Optical cleave tension is 200 grams for 125 micron diameter fiber. Do *not* use 300 grams. As for stripping, mechanical stripping is good, methylene chloride is good, hot acid is best.}, } @article{Shaywitz:05, author = {D. A. Shaywitz and D. A. Melton}, title = {The Molecular Biography of the Cell}, journal = {Cell}, year = 2005, volume = 120, pages = {729--731}, jasnote = {Good discussion of the transition for experimental hypothesis-driven biology to observation and narrative-driven biography. Quo0te: "As we study the life and lineage of a particular adult cell, we ask the same questions that a biographer asks of her subject: what were the critical decisions that defined the trajectory of this life, and when were they made? What was the role of chance? At what point was the final fate initially specified, and when was it ultimately sealed? In essence, we would like to understand the molecular biography of the cell." ... "Biographers are often surprised, and occasionally alarmed, by the implications of their research. Perhap because the study of origins is so fundamental, perhaps because development itself is so fragile, or per haps because the language we employ is so encum bered, the study of cell lineage has also raised difficult questions of a broader nature. In a discipline that seeks to define the contribution of genetic factors and environmental influences in the determination of character and the shaping of destiny, extrapolation beyond the recent studies from embryo may be unavoidable. The French biologist Laurent Chabry, for example, was dismayed by his discovery that the development of a sea squirt appeared relatively predetermined, concerned that he might lend credence to political theories supporting the inheritance of social inequality (Gilbert, 1994). Similarly, Conklin, an ordained lay preacher, struggled to reconcile his scientific observations with his deeply felt religious beliefs, ultimately concluding that "The real dignity of man consists not in his origin but in what he is and in what he may become." Andre Maurois, the French critic, remarked that "a great biography should, like the close of a great drama, leave behind a feeling of serenity." When we are able to write a definitive biography of the differentiated cell, when we are knowledgeable enough to generate such a cell from an embryonic stem cell in a culture dish, and when we are wise enough to appreciate the responsibility associated with such an accomplishment, then we, too, will be entitled to experience such a feeling of serenity. But until then, let us continue to agitate. "}, } @article{Magliozzi:05, author = {T. Magliozzi and R. Magliozzi}, title = {The Blame Game and {SUV}s: Readers Speak Out}, journal = {Seattle Times}, year = 2005, month = {March 18, 2005}, pages = {F1}, note = {({C}ar {T}alk)}, jasquote = {Tom and Ray (of Car Talk): "In the United States, like it or not, a successful lawsuit---which hits companies in the pocketbook---is the fastest way to stop irresponsible corporate behavior."}, } @article{Broad:05, author = {W. J. Broad and S. E Sanger}, title = {Pakistani's Nuclear Black Market Seen as Offering Deepest Secrets of Building Bomb}, journal = {New York Times}, year = 2005, month = {March 21}, jasnote = {Former Director of the Los Alamos Weapons Laboratory Siegfried S. Hecker: "The real secrets [of bomb-making] are in the details of the metallurgy, the manufacturing and the engineering." From the article itself "These manufacturing secrets can take years or even decades for a country to learn on its own.}, } @misc{Goodstein:04, title = {Attracting and Graduating Scientists and Engineers Prepared to Succeed in Acadamia and Industry}, note = {APRIL 1, 1998 Testimony of Dr. David L. Goodstein, Vice Provost, Professor of Physics and Applied Physics, Frank J. Gilloon Distinguished Teaching and Service Professor, The hearing of the House Committee on Science}, jasnote = {http://commdocs.house.gov/committees/science/hsy091000.000/hsy091000_0.htm NATIONAL SCIENCE POLICY STUDY, PART IV: MATH AND SCIENCE EDUCATION: ATTRACTING AND GRADUATING SCIENTISTS AND ENGINEERS PREPARED TO SUCCEED IN ACADEMIA AND INDUSTRY WEDNESDAY, APRIL 1, 1998 U.S. House of Representatives, Committee on Science, Washington, DC. (see file Goodstein.html): The scientists don't have a clue [but] the students have grasped the problem and acted on it. ... It may be necessary to have new curricula and new academic degrees.}, } @article{Burnell:05, author = {J. B. Burnell}, title = {Royal {A}stronomical {S}ociety {P}residential {A}ddress 2004: {A} Celebration of Women in Astronomy}, journal = {Astronomy and Geophysics}, year = 2005, volume = 45, pages = {610--614}, jasnote = {Jocelyn Bell Burnell: "Maybe the science game we play is not actually attractive to a lot of women. It's becoming increasingly a concern of mine that the climate in which we work in our departments, in our institutions, is not attractive to a lot of women. \ldots It's very hard to explain what is wrong \ldots there are lots of horrendous things one can point to."}, } @article{Pierce:05, author = {F. Pierce}, title = {Born Again}, journal = {Conservation in Practice}, year = 2005, volume = 6, number = 1, pages = {14--19}, jasnote = {William McDonough "Design a building that makes oxygen, sequesters carbon, fixes nitrogen, distills water, provides habitat for thousands of species, accrues solar energy as fuel, builds soil, creates microclimate, changes with the seasons, and is beautiful" See "Cradle to Cradle".}, } @article{Byers:04, author = {K. M. Myers and J. M. Aenle}, title = {Where the camera was}, journal = {Mathematics Magazine}, year = 2004, volume = 77, number = 4, pages = {251--9}, } @article{Atiyah:04, author = {M. Itayah and I. Singer}, title = {Interview with Michael Itaya and Isadore Singer}, journal = {Notices of the {AMS}}, year = 2005, month = {February}, pages = {225}, jasnote = {Itaya: "Any good theorem should have several proofs \ldots the more the better. \ldots If you cannot look at a problem from different directions, it is probably not very interesting: the more perspectives, the better}, } @inProceedings{Esashi:04a, author = {D-Y Zhang and T. Ono and M. Esashi}, title = {Piezoactuator-integrated monolithic mlcrostage with six degrees of freedom}, booktitle = {Transducers 03: the 12th International Conference on Solid-State Sensors, Actuators and Microsystems}, year = 2004, publisher = {{IEEE} Electron Devices Society}, pages = {1518--22}, } @inProceedings{Esashi:04b, author = {D. F. Wang and T. Ono and M. Esashi }, title = {Crystallographic influence on nanomechanics of ultra-thin silicon resonators }, booktitle = {Transducers 03: the 12th International Conference on Solid-State Sensors, Actuators and Microsystems}, year = 2004, publisher = {{IEEE} Electron Devices Society}, pages = {336--9}, } @article{Li:04, author = {X. Li and T. Ono and Y. Wang and M. Esashi}, title = {Ultrathin single-crystalline-silicon cantilever resonators: {F}abrication technology and significant specimen size effect on {Y}oung's modulus}, journal = {Applied Physics Letters}, volume = 83, number = 15, pages = {3081}, year = 2003, } @article{Ono:03, author = {T. Ono and M. Esashi}, title = {Magnetic force and optical force sensing with ultrathin silicon resonator}, journal = {Review of Scientific Instruments}, volume = 74, number = 12, pages = {5141--6}, year = 2003, } @article{Ono:04, author = {T. Ono and M. Esashi}, title = {Mass sensing with resonating ultra-thin silicon beams detected by a double-beam laser {D}oppler vibrometer}, journal = {Measurement Science and Technology}, volume = 15, pages = {1977--11}, year = 2004, } @book{Dragoman:04, author = {D. Dragoman and M. Dragoman}, title = {Quantum-{C}lassical analogies}, publisher = {Springer}, year = 2004, jasnote = {good analogies for all forms of QM}, } @book{Wilczek:88, author = {F. Wilczek and B. Devine}, title = {Longing for the Harmonies}, publisher = {Norton}, year = 1988, pages = {210--211}, jasnote = {[It] is tedious to calculate even the simplest physical properties in these theories [which] of course means it's hard to avoid mistakes (or even if you have avoided them, to be sure you have). \ldots There is also a more complex problem that goes under the rubric ``maintaining gauge invariance.'' The essence of the problem is that the most convenient version of the theory contains a lot of stuff (like negative probability particles) with no direct physical meaning. And this means that it is easy to start calculating pure nonsense without being aware of it.}, } @misc{INSPEC:04, key = {IEEE bibliographic database INSPEC}, year = 2005, note = {As of January 2005, the INSPEC database contained 17,297 articles for the five-year period 1999--2003 (inclusive) that included the words ``quantum'' and ``measurement'' in the subject, title, or abstract.}, } @article{Kandebo:97, author = {S. W. Kandebo}, title = {Lean initiative spurs industry transformation}, journal = {Aviation Week and Space Technology}, year = 1997, month = {July 28}, pages = {56--58}, } @book{Blair:54, author = {C. Blair}, title = {The {A}tomic {S}ubmarine and Admiral Rickover}, publisher = {H. Holt}, year = 1954, } @book{Duncan:90, author = {Francis Duncan}, title = {Rickover and the Nuclear Navy : the Discipline of Technology}, publisher = {Naval Institute Press}, year = 1990, } @book{Liker:04, author = {J. Liker}, title = {The Toyota Way: Fourteen Management Principles from the World's Greatest Manufacturer}, publisher = {McGraw-Hill Education}, year = 2004, note = {This research was funded by the Air Force Office of Scientific Research (AFOSR).}, } @article{Dobson:04, author = {C. M. Dobson }, title = {Chemical space}, journal = {Nature}, volume = 432, pages = {823}, year = {2004}, } @article{Kirkpatrick:04, author = {P. Kirkpatrick and C. Ellis}, title = {Chemical space and biology}, journal = {Nature}, volume = 432, pages = {824--828}, year = 2004, } @article{Lipinski:04, author = {C. Lipinski and A. Hopkins}, title = {Navigating chemical space for biology and medicine}, journal = {Nature}, volume = 432, pages = {855--861}, year = 2004, } @book{Ohno:88, author = {Taiichi \={O}no}, title = {Toyota Production System: Beyond Large-Scale Production}, publisher = {Productivity Press}, year = 1988, note = {English translation of \protect\emph{Toyota Seisan H\={o}shiki}.}, } @book{Shingo:88, author = {Shigeo Shing\={o}}, title = {A Study of the Toyota Production System from an Industrial Engineering Viewpoint (Produce What Is Needed, When It's Needed)}, publisher = {Productivity Press}, year = 1988, note = {English translation of \protect\emph{Toyota Seisan H\={o}shiki No IE-teki K\={o}satsu}.}, } @book{Tufte:83, author = {E. R. Tufte}, title = {The Visual Display of Quantitative Information}, publisher = {Graphics Press}, year = 1983, } @book{Raymer:99, author = {D. P. Raymer}, title = {Aircraft Design : a Conceptual Approach}, publisher = {American Institute of Aeronautics and Astronautics}, year = 1999, chapter = {17.6}, jasnote = {specific excess power (SEP)}, } @book{Brandt:97, author = {S. A. Brandt and R. J. Stiles and J. J. Bertin and R. Whitfor}, title = {Introduction to Aeronautics : a Design Perspective}, publisher = {American Institute of Aeronautics and Astronautics}, year = 1997, chapter = {15.3}, jasnote = {specific excess power (SEP)}, } @book{Asselin:97, author = {M. Asselin}, title = {An Introduction to Aircraft Performance}, publisher = {American Institute of Aeronautics and Astronautics}, year = 1997, chapter = 8, jasnote = {specific excess power (SEP)}, } @book{Coram:02, author = {R. Coram}, title = {Boyd: The Fighter Pilot Who Changed the Art of War}, publisher = {Little, Brown}, year = 2002, jasnote = {specific excess power (SEP)}, } @article{Hillaker:97, author = {H. Hillaker}, title = {Tribute To {J}ohn {R}. {B}oyd}, journal = {Code One}, year = 1997, note = {Available on-line at\\ \url{http://www.codeonemagazine.com/archives/1997/articles/jul_97/july2a_97.html}}, } @book{Mehra:00, author = {J. Mehra and K. A. Milton}, title = {Climbing the Mountain : the Scientific Biography of Julian Schwinger}, publisher = {Oxford University Press}, year = 2000, pages = {300--304}, } @inCollection{Ng:96, author = {J. Schwinger}, title = {The {G}reening of Quantum Field Theory: {G}eorge and {I}}, booktitle = {Julian Schwinger: the Physicist, the Teacher, and the Man}, editor = {Y. J. Ng}, publisher = {World Scientific}, year = 1996, note = {{Text of lecture given by Schwinger at Nottingham University, July 14, 1993. Available on-line at:\\ \url{http://www.arxiv.org/abs/hep-ph/9310283}}.}, } @misc{UWQSE:04, note = {\\ \url{http://courses.washington.edu/goodall/MRFM/}}, year = 2004, author = {The UW Quantum System Engineering (QSE) Group}, } @misc{ALMAR:96, year = 1996, author = {Commandant of the Marine Corps}, note = {Order begins: ``\protect\emph{To: All Marines (ALMAR). Date signed: 07/08/96. ALMAR Number: 246/96. Subject: This ALMAR establishes the scope of the [Commandant's] reading program and promulgates the reading lists.}''\\ The full text of the original ALMAR directive can be found at:\\ \protect\hspace*{2em}\url{http://www.usmc.mil/cmcalmars.nsf/homepage+almars?openview}\\ and the present reading list can be found at\\ \protect\hspace*{2em}\url{http://www.mcu.usmc.mil/mcu/Reading/usmclist.htm} \\ Note: Cray's 1990 book \cite{Cray:00} appeared on the original 1996 ALMAR reading list, and McMaster's 1997 book \cite{McMaster:97} was added subsequently.}, } @book{Lifton:99, author = {R. J. Lifton}, title = {Destroying the World to Save It: Aum Shinrikyo, Apocalyptic Violence, and the New Global Terrorism}, publisher = {Henry Holt and Company, New York}, year = 1999, } @book{Diamond:04, author = {J. Diamond}, title = {Collapse: How Societies Choose to Fail or Succeed}, publisher = {Viking Books}, year = 2004, jasnote = {p. 373 (horserace) "The same question arises everywhere in the world: the development of environmental problems is accelerating, the development of attempted solutions is also accelerating, which horse will win the race?"}, } @book{Collins:04, author = {H. M. Collins}, title = {Gravity's Shadow : the Search for Gravitational Waves}, publisher = {University of Chicago Press}, year = 2004, } @misc{MURI:04, note = {Announcement \#04-021. See pages 27--8, Topic \#6: Advancement of Magnetic Resonance Force Microscopy to Single Nuclear Spin Detection. \\ \url{http://www.onr.navy.mil/02/baa/docs/04_021.pdf}\ \href{http://www.onr.navy.mil/02/baa/docs/04_021.pdf}{(pp.\ 27-8)}}, year = 2004, key = {ONR BAA}, } misc{FMI03-19:04, title = {FMI03-19:04}, year = 2004, month = {October}, jasnote = { The use of weapons of mass destruction can radically alter the flow of battle, restrict terrain, limit mobility, degrade military efficiency, and even shift the balance of power, placing a superior force at risk. NBC reconnaissance is a crucial element of combat operations that enables us to limit risk and avoid NBC contamination hazards.\par The technology to produce and deliver chemical/biological (CB) weapons is proliferating at an alarming pace. Nations in some of the world's most unstable regions perceive CB weapons as an effective deterrent against other more technically advanced nations. Some leaders view the mere possession of these weapons as an international military status symbol. Further, the technology used in CB weapons is readily available for the determined buyer.\par Arguments that certain types of US forces will not encounter a CB or even a radiological threat are no longer valid. These weapons are possessed by potential hostile nations where the United States maintains a strategic interest. These same nations either have or are acquiring ballistic missiles thus extending their targeting capability. \par Even at the lowest end of the operational continuum (peace time competition), our Army has a need to assess, contain, and limit NBC hazards. Some corporations find the cheap labor pool and relaxed safety and environmental restrictions in developing nations to be attractive options for industrial and chemical production facilities. These facilities, either through accident or sabotage, may release chemical hazards that equal those found in open chemical warfare. Accidents or sabotage in nations that possess a nuclear industry can create radiological hazards like those of the 1986 Chernobyl reactor fire.\par}, } The global technology revolution : bio/nano/materials trends and their synergies with information technology by 2015 / Philip S. Anton, Richard Silberglitt, James Schneider. @techReport{RAND:01, author = {P. S. Anton and R. Silberglitt and J. Schneider}, title = {The global technology revolution : bio/nano/materials trends and their synergies with information technology by 2015}, institution = {{R}{A}{N}{D}}, year = 2001, note = {\\\url{http://www.rand.org/publications/MR/MR1307/MR1307.pdf}}, } @misc{BWC:75, year = 1975, title = {Convention on the prohibition of the development, production and stockpiling of bacteriological (biological) and toxin weapons and on their destruction}, note = {\\\url{http://www.fas.org/nuke/control/bwc/text/bwc.htm}}, } @book{Miller:01, author = {J. Miller and S. Engelberg and W. Broad}, title = {Germs: biological weapons and America's secret war}, publisher = {Simon and Schuster}, year = 2001, } @book{Alibek:99, author = {K. Alibek}, title = {Biohazard: the chilling true story of the largest covert biological weapons program in the world, told from the inside by the man who ran it}, publisher = {Random House}, year = 1999, } @manual{2020Project:04, title = {Report of the 2020 Project: Mapping the Global Future}, organization = {National Intelligence Council}, year = 2004, month = {December}, note = {GPO Stock 041-015-0024-6\\\url{http://www.foia.cia.gov/2020/2020.pdf}}, } @manual{FMI03-07.22:04, title = {Field Manual (Interim) FMI 3-07.22: Counterinsurgency Operations}, organization = {Department of the Army, Combined Arms Doctrine Directorate}, year = 2004, month = {October}, note = {\\\url{http://www.fas.org/irp/doddir/army/fmi3-07-22.pdf}}, jasnote = {"An FMI is a DA publication that provides expedited delivery of urgently needed doctrine the proponent has approved for use without placing it through the standard development process." (page vii) "Achieving success in counterinsurgency operations involves accomplishing the following tasks: Protect the population. Establish local political institutions. Reinforce local governments. Eliminate insurgent capabilities. Exploit information from local sources. " (Section 2-15) "Counterinsurgency is a type of stability operation. (See FM 3-07, chapter 3.)" (4-1) "The successful conduct of counterinsurgency operations relies on the willing support and cooperation of the populations directly involved. Greater priority and awareness is needed to understand the motivations of the parties involved in the conflict and the population as a whole. The understanding of the background and development of the conflict into which US forces are intervening is of particular significance. This requires a detailed understanding of the cultural environment and the human terrain in which the US forces will be operating and thereby places a heavy reliance on the use of HUMINT. "}, } @manual{FM03-07:03, title = {Field Manual FMI 3-07: Stability Operations and Support Operations}, organization = {Department of the Army}, year = 2003, month = {February}, jasquotes = {see later edition: FM03-07:03; (passage I-26) "The current strategic environment is complex, dynamic, and uncertain."; (Passage I-27) " Few states will have the resources, or the need, to attack the US directly in the near future. However, many will challenge it for control or dominance of a region. Potential adversaries may increasingly resort to asymmetric means to threaten our national interests. Such methods include unconventional, unexpected, innovative, or disproportional means used to gain an advantage. Adversaries may use inexpensive approaches that circumvent the US strengths, exploit its vulnerabilities, or confront it in ways the US cannot match in kind. Contemporary threats include terrorism; chemical, biological, radiological, nuclear, and high-yield explosive (CBRNE) threats; information operations; exploitation of commercial or space-based systems; denial of our access to critical resources; and environmental sabotage." (passage 1-35) " Stability operations and support operations often take place in political, military, and cultural situations that are highly fluid and dynamic. Unresolved political issues, an unclear understanding or description of a desired end state, or difficulty in gaining international consensus may cause ambiguity. Complexity in these actions may also arise from? Troops dispersed throughout the AO. Difficulty in discriminating between combatants and noncombatants or between the many parties of a dispute. Undisciplined factions, uncontrolled by a central authority and unwilling to consent to the agreement. Absence of basic law and order. Violations of human rights. Widespread destruction or decay of physical and social infrastructure and institutions; collapse of civil infrastructure. Environmental damage. Threats of disease or epidemics. Presence of many displaced persons. Presence and involvement of nongovernmental organizations, media, and other civilians. See also "ELEMENTS OF INSTABILITY", page 1-9}, } @inCollection{Buchman:98, author = {S. Buchman and W. Bencze and R. Brumley and B. Clarke and G. M. Keiser}, title = {The Design and Testing of the {G}ravity {P}robe {B} Suspension and Charge Control System}, booktitle = {CP456, Laser Interferometer Space Antenna}, publisher = {American Institute of Physics}, year = 1998, editor = {W. M. Folkner}, pages = {178--187}, } @article{Marohn:04, author = {S. R. Garner and S. Kuehn and J. M. Dawlaty and N. E. Jenkins and J. A. Marohn}, title = {Force-detected nuclear magnetic resonance}, journal = {Appled Physics Letters}, year = 2004, pages = {5091}, } @book{MacKay:04, author = {D. J.C. MacKay}, title = {Information Theory, Inference, and Learning Algorithms}, publisher = {Cambridge University Press}, year = 2004, } @inCollection{Beyerchen:96, author = {A. Beyerchen}, editor = {W. Murray and A. R. Millett}, title = {From radio to radar: Interwar military adaptation to technological change in {G}ermany, the {U}nited Kingdom, and the {U}nited {S}tates}, booktitle = {Military Innovation in the Interwar Period}, publisher = {Cambridge University Press}, year = 1996, pages = {265--299}, jasnote = {(page 265): "The key to the timing that turns a discovery or invention into successful innovation lies in whether laymen can envision its possibilities."}, } @inCollection{Murray:96, author = {W. Murray}, editor = {W. Murray and A. R. Millett}, title = {Innovation: Past and Future}, booktitle = {Military Innovation in the Interwar Period}, publisher = {Cambridge University Press}, year = 1996, pages = {300-328}, jasnote = {(page 327) "At every level the services need to think in clear measures of effectiveness. They need to consider in a realistic fashion exactly what it is they wish to do to potential opponents. And, as changes occur in war, new measures and methods will be needed.}, } @inCollection{Millet:96, author = {A. R. Millet}, editor = {W. Murray and A. R. Millett}, title = {Patterns of Military Innovation in the Interwar Period}, booktitle = {Military Innovation in the Interwar Period}, publisher = {Cambridge University Press}, year = 1996, pages = {329--368}, jasnote = {(page 348): "The integration of civilian and military development [\ldots] worked well in all the industrialized nations. The opposite model---of innovation controlled by bureaucratized military technicians---offers miscalculations of mythic proportions." (page 368) "Sheer technical innovation, as the Germans proved, does not win wars."}, } @techReport{sidles:03LIGO, author = {J. A. Sidles and D. Sigg}, title = {Optical Torques in Suspended {F}abry-{P}erot Interferometers}, institution = {{L}{I}{G}{O} Document Control Center}, year = 2003, note = {Document P030055-B-D\protect\\ \url{http://www.ligo.caltech.edu/docs/P/P030055-B.pdf}}, } @book{Gallager:68, author = {R. G. Gallager}, title = {Information Theory and Reliable Communication}, publisher = {Wiley}, year = 1968, jasnote = {Water fill theorem is in Sections 7.5 and 8.3, disturbing use of infinite bandwidth, disturbing use of zero bandwidth} } @article{Bar-David:89, author = {I. Bar-{D}avid and S. Shamai}, title = {Information rates for magnetic recording channels with peak- and slope- limited magnetization}, journal = {{IEEE} Transactions on Information Theory}, volume = 35, number = 5, pages = {956--962}, year = 1989, jasnote = {good use of Gallager Water-Filling theorem}, } @book{Horikoshi:81, author = {J. Horikoshi}, title = {Eagles of Mitsubishi: the Story of the Zero fighter}, publisher = {University of Washington Press}, year = 1981, jasnote = {Jiro Horikoshi page 57: "Somehow I felt the enthusiasm in the Navy was cooling off for the [Zero]. ... Those of us who live in the world of technology should not have to experience joy and sorrow in quick alternation as a result of half-joking criticism or unfounded guesses. I worked with all my might, warning myself not to misjudge what was needed for long-term progress. " page 149:"Our losses were the result of poor political leadership caused by a lack of consideration and responsibility. I prayed, "Let intelligent leaders step forward'". page 150: "Unlike the imaginative work of the artist, the task of an engineer is always shadowed by severe, realistic conditions and requirements. But in order to achieve a high quality of creativity within this framework, the engineer must use free imagination to crack through ordinary paths of thinking, and this must be coupled with complete rationality. If the given package cannot be altered in any way, and if ordinary ideas are employed, little difference will be achieved between final products." This book by Mitsubishi's chief designer affirms that the Zero was a wholly Japanese design. However, the key Zero design elements of a low wing, retractable gear, and radial engine were present in Howard Hughes' H-1 Racer of 1935, and according to the Smithsonian Museum's plaque on the H-1: "The Hughes H-1 racer was a major milestone aircraft on the road to such radial engine-powered World War II fighters as the American Grumman F6F Hellcat and Republic P-47 Thunderbolt, the Japanese Mitsubishi Type 0 (Zero), and the German Focke-Wulf FW 190." Rumors were widespread during WWII that the Zero was simply a copy of the H-1 Racer, or that Howard Hughes had designed the Zero and then sold the plans to the Japanese after failing to interest the US Government. These rumors have never been confirmed. number UG1242.F5 H6813}, } @inCollection{Jacky:, author = {J. Jacky}, booktitle = {Computers in Battle: Will They Work?}, title = {The Strategic Computing Program}, publisher = {Hartcourt Brace Javanovich}, year = 1987, editor = {D. Bellin and G. Chapman}, jasquotes = {"Many of the strategic computing milestones are grossly, naively unrealistic." Cost of military intervention cheap -- leads to scenarios in which military victory is cheap.}, } @article{Stephenson:96, author = {N. Stephenson}, title = {Mother Earth Mother Board}, journal = {Wired}, volume = 4, number = 12, year = 1996, jasquote = {"Both Penang and the Internet were established basically for strategic military reasons. In both cases, what was built by the military was merely a kernel for a much vaster phenomenon that came along later. This kernel was really nothing more than a protocol, a set of rules. If you wanted to follow those rules, you could participate, otherwise you were free to go elsewhere. Because the protocol laid down a standard way for people to interact, which was clearly set out and could be understood by anyone, it attracted smart, adaptable, ambitious people from all over the place, and at a certain point it flew completely out of control and turned into something that no one had ever envisioned: something thriving, colorful, wildly diverse, essentially peaceful, and plagued only by the congestion of its own success."}, } @book{Roland:02, author = {A. Roland and P. Shiman }, title = {Strategic Computing : DARPA and the Quest for Machine Intelligence, 1983-1993}, publisher = {{M}{I}{T} Press}, year = {2002}, jasquote = {authors canned by DARPA}, } @book{Scholz:02, author = {C. Scholz}, title = {Radiance}, publisher = {Picador {USA}}, year = 2002, jasquote = {page 209, Reti: "Funding comes from the threat" Victory comes from hope and security.}, } @book{McMaster:97, author = {H. R. McMaster}, title = {Dereliction of Duty: Lyndon Johnson, Robert McNamara, the Joint Chiefs of Staff, and the Lies that Led to Vietnam}, publisher = {HarperPerennial}, year = 1997, jasquote = {page 243, Chapter 12, "A Quicksand of Lies" (quotes Hans Morgenthau) "To say that the most momentous issues a nation must face cannot be openly and critically discussed is really tantamount to saying that democratic debate and decision do not apply the the questions of life and death. ... Not only is this position at odds with the principles of democracy, but it removes a very important corrective for governmental misjudgement.", page 334 (conclusion): "The war in Vietnam was not lost in the field, nor was it lost on the front pages of the New York Times or on the college campuses. It was lost in Washington D.C., even before Americans assumed sole responsibility for the fighting in 1965 and before they realized the country was at war; indeed, even before the first American units were deployed. The disaster in Vietnam was not the result of impersonal forces but a uniquely human failure, the responsibility for which was shared by President Johnson and his principal military and civilian advisors. The failings were many and reinforcing: arrogance, weakness, lying in the pursuit of self-interest, and, above all, the abdication of responsibility to the American people." } } @book{Barber:75, author = {R. J. Barber}, title = {The Advanced Research Projects Agency, 1958--1974}, publisher = {Richard J. Barber Associates}, year = 1975, note = {NTIS accession no. AD-A154 363.}, jasnote = {Order this product from NTIS by: phone at 1-800-553-NTIS , email at orders@ntis.fedworld.gov. NTIS is located at 5285 Port Royal Road, Springfield, VA, 22161, USA.}, jasquotes = { ARPA directors, 1958-1975, from Fig. I-6 (after page I-6) Roy W. Johnson 2/58 -- 11/59 Gen. A. W. Betts 12/59 -- 1/61 Dr. Jack P. Ruina 2/61 -- 9/63 Dr. Robert L. Sproull 9/63 -- 6/65 Dr. Charles M. Herzfeld 6/65 -- 3/67 Dr. Peter Franken (acting) 3/67 -- 11/67 Dr. Eberhard Rechtin 11/67 -- 1/71 Dr. Stephen J. Lukasik 1/71 -- 1/75 Dr. George H. Heilmeier 1/75 -- VIII-43 Barber, re AGILE program in Rechtin years: "This was indeed an area where ARPA and many other [agencies] were limited by ideas, not funds, and tried unsuccessfuly to compensate for the former with a generous application of the latter." Notes: (advanced sensors abolished as an ARPA office in 1973). Quote -1: IX-38 "Director Lukasik "The urgent drives out the important. ... This is one of the reasons why so much of the money that ARPA put into the Vietnam War was not a good use of ARPA resources. Because there was very little of a fundamental nature that was done, because we were working on the *urgent*, not the important." Quote 0: Barber X-1 "At most, about one-third of ARPA's lifetime can be said to be 'normal'. Most of the time it functioned in the midst of considerable bureaucratic stress. Outright abolition was widely discussed in 1959 and apparently quite seriously considered at the Secretary's level a decade later." Quote 1: IX-13 Director Lukasic: "I really believe that the reason why you can't leave certain defense science up to the NSF, is that the NSF is going to pick its priorities on the basis of science and it may turn out that ... the defense [problem] is ninth on that list, and it may be a first rank [problem] for defense. ... [Basic research] can be mission-relevant basic research, and that's the essential point. Quote 2: VII-28,29 During Director Herzfeld's tenure "The ARPA review figures show graduate student-research assistants in materials fields increasing from approximately 1100 in 1961-2 to 2000 in 1965-66, an 82 percent increase. ARPA-supported graduate students alone accounted for some 600 of the addition." However, under Vietnam funding pressure, the IDL program was cut from 27.3 million in 1967 to 4.4 million in 1968 ... the program never recovered. Quote 3: VIII-59 Under Director Rechtin "Materials science now concentrates ... on reducing materials science to practice by demonstrating novel devices and new techniques." IDL's rechristened as Materials Research Laboratories (MRL's). Quote 4: Avoiding technological surprise. Sproull (X-17) "I regarded that [guarding against technological surprise as the heart of our mission ... as *the* principal mission of the Agency. " Barber remarks: this is extremely hard to do in the context of insisting upon relevance and rapid transfer. Rechtin is anti-surprise (X-20): "You can't do anything fast enough in the business that the other side can't compensate for it before it gets disastrous. In other words, you can't come up with an overwhelming operational advantage in any short time." }, } @article{Schmitt:04, author = {E. Schmitt and T. 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