@book{Dragoman:04, author = {D. Dragoman and M. Dragoman}, title = {Quantum-{C}lassical Analogies}, publisher = {Springer-Verlag}, year = 2004, jasnote = {Daniela and Mircea Dragoman have written a fine book, on QUantum-Classical analogies which however does not encompass quantum jumps}, } @article{Russel:04, author = {E. Vidal Russel and N. E. Israeloff}, title = {Direct observation of molecular cooperativity near the glass transition}, journal = {Nature}, year = 2000, volume = 408, number = 7, pages = {695--698}, jasnote = {best single article on force microscope observation of single-molecule dielectric relaxation}, } @article{Starkweather:92, author = {H. W. Starkweather and P. Avakian and R. R. Matheson and J. J. Fontanella and M. C. Wintersgill}, title = {Ultralow Temperature Dielectric Relaxations in Polyolefins}, journal = {Macromolecules}, year = 1992, volume = 25, pages = {6871--6875}, jasnote = {best single article on ultra-low temperature relaxation}, } @article{Kamiyoshi:58, author = {K. Kamiyoshi and J. Ripoche}, title = {Etude par absorption hetzienne de l'eau adsorbe sur un gel silica}, journal = {Journal De Physique Et Le Radium}, year = 1958, volume = 19, pages = {943--946}, jasnote = {best single reference on adsorbed water absorption}, } @book{McIntosh:66, author = {R. McIntosh}, title = {Dielectric Behavior of Physically Absorbed Gases}, publisher = {Arnold, London}, year = 1966, jasnote = {see figure 5-7 for water on silica gel, taken from Kamiyoshi and Riposhe}, } @book{Hill:69, author = {N. E. Hill and W. E. Vaughan and A. H. Price and M. Davies}, title = {Dielectric Properties and Molecular Behavior}, publisher = {Van Nostrand Reinhold}, year = 1969, jasnote = {dielectric relaxation -- best literature review see figure 5.76, page 430}, } @book{McIntosh:66, author = {R. McIntosh}, title = {Dielectric Behavior of Physically Absorbed Gases}, publisher = {Arnold, London}, year = 1966, } @book{Bunget:84, author = {I. Bunget and M. Popescu}, title = {Physics of Solid Dielectrics}, publisher = {Elsevier}, year = 1984, jasnote = {Good discussion of Debye equations}, } @book{Kuo:04, author = {K. C. Kuo}, title = {Dielectric Phenomena in Solids}, publisher = {Elsevier}, year = 2004, jasnote = {good working discussion of DeBye equation}, } @book{Hillel, author = {K. C. Cole}, title = {First, You Build a Cloud, and Other Reflections on Physics as a Way of Life}, publisher = {Hartcourt Brace \& Company}, year = 1999, jasnote = {page 208: "The step from not being able to do something at all to being able to do it a little bit is much smaller than the next step---being able to do it well." Yehoshua Bar-Hillel}, } @article{Calderbank:98, title = {The Art of Signaling: Fifty Years of Coding Theory}, author = {A. R. Calderbank}, journal = {{IEEE} Transactions on Information Theory}, volume = 44, number = 6, pages = {2561--2595}, year = 1998, jasnote = {Shannon-Hartley Theorem} } @book{Taub:86, author = {H. Taub and D. L. Schilling}, title = {Principles of Communication Systems}, edition = {2}, publisher = {McGraw-Hill}, year = 1986, jasnote = {Sections 13.7--8 for the Shannon-Hartley Theorem}, } @article{Rugar:04, author = {D. Rugar and R. Budakian and H. J. Mamin and B. W. Chui}, title = {Single spin detection by magnetic resonance force microscopy}, journal = {Nature}, year = 2004, volume = 430, pages = {329--332}, } @article{Sallares:04, author = {R. Sallares and A. Bouwman and C. Anderung}, title = {The Spread of Malaria to Southern Europe in Antiquity: New Approaches to Old Problems}, journal = {Medical History}, year = 2004, volume = 48, pages = {311-328}, jasnote = {P. Falciparum divergence parallells human divergence from chimpanzees, approximately 5--10 million years ago ... an example of parasite-host co-speciation.}, } @unpublished{Matsen:04, author = {F. A. Matsen {III} and R. S. Boorman and J. M. Clark and D. Deffenbaugh and K. M. Gibbs and D. L Korvick and A. G. Norman and S. M. Ott and I. M. Parsons {IV} and J. A. Sidles and R. Titelman}, title = {Early Response of Reamed Bone Articulating Against a Metal Surface: A Canine Model of Shoulder Hemiarthroplasty}, note = {\emph{Journal of Orthopaedic Researc} (to appear)}, } @misc{Pauling:46, author = {L. Pauling}, title = {The possibilities for progress in the fields of biology and biological chemistry}, year = {1946}, note = {Proposal to Warren Weaver, Rockefeller Foundation, June 19, 1946. This file was supplied to us by historian Lily Kay (see \cite{Kay:93}); copy available upon request to J.~Sidles}, } @article{Sali:04, author = {A. Sali and R. Glaeser and T. Earnest and W. Baumeister}, title = {From words to literature in structural proteomics}, journal = {Nature}, year = 2004, volume = 422, pages = {216--225}, } @manual{NIH:04, title = {{NIH} Orientation Program, Appendix 1, Manual 2300--935}, organization = {National Institutes of Health}, } @inCollection{Witten:03, author = {E. Witten}, title = {The past and future of string theory}, booktitle = {The Future of Theoretical Physics and Cosmology}, publisher = {University of Cambridge}, year = 2003, editor = {G. Gibbons and P. SHellard and S. Rankin}, pages = {455--462}, jasnote = {page 457: 'General relativity is a wonderful theory classically. One can well argue that it is our finest classical theory; for example, it is the only classical theory to which we devote conferences.'}, } @article{Mendel:91, author = {J. M. Mendel}, title = {Tutorial on higher-order statistics (spectra) in signal processing and system theory: theoretical results and some applications}, journal = {Proceedings of the {IEEE}}, year = 1991, volume = {79(3)}, pages = {278--305}, } @article{Picinbono:99, author = {B. Picinbono}, title = {Polyspectra of ordered signals}, journal = {{IEEE} Transactions of Information Theory}, year = 1999, volume = {45(7)}, pages = {2239--2252}, } @article{Picinbono:00, author = {B. Picinbono}, title = {Moments and polyspectra of the discrete-time random telegraph signal}, journal = {{IEEE} Transactions of Information Theory}, year = 2000, volume = {46(7)}, pages = {2735--2739}, } @article{Jakeman:99, author = {E. Jakeman and K. D. Ridley}, title = {Statistics of a filtered telegraph signal}, journal = {Journal of Physics A}, volume = 32, year = 2000, pages = {8803-8821}, } @book{Rogers:00, author = {L. C. G. Rogers and D. Williams}, title = {Diffusions, Markov Processes and Martingales, Volume 2: It$\hat{o}$ Calculus}, publisher = {Cambridge Mathematical Library}, year = 2000, chapter = {V}, pages = {144}, jasnote = {Example of Brownian motion on a sphere}, } @article{Peres:04, author = {A. Peres and D. R. Terno}, title = {Quantum information and relativity theory}, journal = {Reviews of Modern Physics}, year = 2004, volume = {76(1)}, pages = {93--123}, jasnote = {Good discussion of POVM literature. But no reference to Choi.}, } @article{Choi:75, author = {M.-D. Choi}, title = {Completely positive maps on linear matrices}, journal = {Linear Algebra and Its Applications}, year = 1975, volume = 10, pages = {285--290}, jasnote = {POVM literature}, } @article{Stinespring:55, author = {W. F. Stinespring}, title = {Positive Functions on {$C^\ast$}-Algebras}, journal = {Proceedings of the American Mathematical Society}, volume = {6(2)}, year = 1955, pages = {211--216}, } @article{Kraus:71, author = {K. Kraus}, title = {General state changes in quantum theory}, journal = {Annals of Physics}, year = 1971, volume = 64, pages = {311--335}, jasnote = {Reference Stinespring}, } @book{Taira:04, author = {K. Taira}, title = {Semigroups, Boundary Value Problems, and Markov Processes}, publisher = {Springer}, year = 2004, jasnote = {too tough for me!}, } @book{Krantz:00, author = {S. G. Krantz}, title = {A Mathematician's Survival Guide: Graduate School and Early Career Development}, publisher = {American Mathematical Society}, year = 2000, jasnote = {Good graduate career guide}, } @book{Alicki:87, author = {R. Alicki and K. Lendi}, title = {Quantum Dynamical Semigroups and Applications}, publisher = {Springer-Verlag}, year = 1987, jasnote = {"singular coupling limit" -- seems to correspond to the batrachian form of the Kraus operators.}, } @article{Palmer:77, author = {P. F. Palmer}, title = {The singular coupling and weak coupling limits}, journal = {Journal of Mathematical Physics}, year = 1977, pages = {527--529}, jasnote = {reflects strong and weak coupling limits in Theorem 3.1}, } @inBook{Wilson:94, author = {E. O. Wilson}, title = {Naturalist}, publisher = {Island Press/Shearwater Books}, year = 1984, pages = {364}, chapter = {Biodiversity, Biophilia}, jasquote = {(JAS idea --you are your own Gaia). Wilson page 5: "This creature was astonishing. It existed outside my previous imagination." Wilson page 9: "I also hoped for more than sharks, what exactly I could not say: something to enchant the rest of my life." Wilson's concluding paragraph: If I could do it all over again, and relive my vision in the twenty-first century, I would be a microbial ecologist. Ten billion bacteria live in a gram of ordinary soil, a mere pinch held between thumb and forefinger. They represent thousands of species, almost none of which are known to science. Into that world I would go with the aid of modern microscopy and molecular analysis. I would cut my way through clonal forests sprawled across grains of sand, travel in an imagined submarine through drops of water proportionally the size of lakes, and track predators and prey in order to discover new life ways and alien food webs. All this, and I need venture no more than ten paces outside my laboratory building. The jaguars, ants, and orchids would still occupy distant forests in all their splendor, but now they would be joined by an even stranger and vastly more comples living world virtually without end. For one more turn around I would keep alive the little boy of Paradise Beach who found wonder in a scyphozoan jellyfish and a barely glimpsed monster of the deep.}, } @book{Davies:76, author = {E. B. Davies}, title = {Quantum Theory of Open Systems}, publisher = {Academic Press}, year = 1976, jasnote = {Good definition of POVMs}, } @book{Breuer:02, author = {H.-P. Breuer and F. Petruccione}, title = {The Theory of Open Quantum Systems}, publisher = {Oxford University Press}, year = 2002, jasnote = {Good relation of Ford, Lewis, O'Connell model to Feynman-Vernon influence functional. But not attributed!}, } @misc{Mattis:04, jassource = {San Diego Union Tribune}, date = {April 4, 2004}, year = 2004, jasquote = {March 23, 2004 Letter to All Hands: We are going back in to the brawl. We will be relieving the magnificent Soldiers fighting under the 82nd Airborne Division, whose hard won successes in the Sunni Triangle have opened opportunities for us to exploit. For the last year, the 82nd Airborne has been operating against the heart of the enemyÕs resistance. ItÕs appropriate that we relieve them. When itÕs time to move a piano, Marines donÕt pick up the piano bench - we move the piano. So this is the right place for Marines in this fight, where we can carry on the legacy of Chesty Puller in the Banana Wars in the same sort of complex environment that he knew in his early years. Shoulder to shoulder with our comrades in the Army, Coalition Forces and maturing Iraqi Security Forces, we are going to destroy the enemy with precise firepower while diminishing the conditions that create adversarial relationships between us and the Iraqi people. This is going to be hard, dangerous work. It is going to require patient, persistent presence. Using our individual initiative, courage, moral judgment and battle skills, we will build on the 82nd AirborneÕs victories. Our country is counting on us even as our enemies watch and calculate, hoping that America does not have warriors strong enough to withstand discomfort and danger. You, my fine young men, are going to prove the enemy wrong - dead wrong. You will demonstrate the same uncompromising spirit that has always caused the enemy to fear AmericaÕs Marines. The enemy will try to manipulate you into hating all Iraqis. Do not allow the enemy that victory. With strong discipline, solid faith, unwavering alertness, and undiminished chivalry to the innocent, we will carry out this mission. Remember, I have added, ÒFirst, do no harmÓ to our passwords of ÒNo Better Friend, No Worse Enemy.Ó Keep your honor clean as we gain information about the enemy from the Iraqi people. Then, armed with that information and working in conjunction with fledgling Iraqi Security Forces, we will move precisely against the enemy elements and crush them without harming the innocent. This is our test-our Guadalcanal, our Chosin Reservoir, our Hue City. Fight with a happy heart and keep faith in your comrades and your unit. We must be under no illusions about the nature of the enemy and the dangers that lie ahead. Stay alert, take it all in stride, remain sturdy, and share your courage with each other and the world. You are going to write history, my fine young Sailors and Marines, so write it well. Semper Fidelis, J. .N. Mattis, Major General, U. S. Marines } } @article{Friedman:04, author = {T. Friedman}, title = {Awakening to a Dream}, journal = {New York Times, March 28,2004}, year = 2004, pages = {WK-13}, jasquote = {"As Stephen P. Cohen says: 'That is the characteristic of our time --- all the imagination is in the hands of the evildoers.'", "I am so hungry for a positive surprise."}, } @book{Sprat:1667, author = {T. Sprat}, title = {The History of the Royal Society of London for the Improving of Natural Knowledge}, publisher = {London}, year = 1667, jasquote = {{The \emph{English} [are] avers from admitting of new \emph{Inventions}, and shorter ways of labor, and from naturalizing New-people: Both which are the fatal mistakes that have made the \emph{Hollanders} exceed us in \emph{Riches} and \emph{Traffic}: They receive all \emph{Projects} and all \emph{People}, and have few or no \emph{Poor}}.}, } @book{Castillo:04, author = {G. F. Torres del Castillo}, title = {3-{D} Spinors, Spin-weighted Functions, and their Applications}, publisher = {Birkhauser}, year = 2003, jasnote = {Good starting companion to Perelomov's Coherent States and their Applications}, } @inbook{Wilson:84, author = {E. O. Wilson}, title = {Biophilia}, publisher = {Harvard University Press}, year = 1984, pages = {113}, chapter = {The Right Place}, jasquote = {Why dilate on the obvious? The answer is that the obvious is usually profoundly significant.}, } @misc{Hoover:04, author = {H. Hoover}, note = {quoted on the wall of the Standford University Herbert Hoover Memorial Library: "To the engineer falls the job of clothing the bare bones of science with life, comfort, and hope."}, } @article{Stenflo:04, author = {L. Stenflo}, journal = {Science}, volume = 427, pages = {777}, year = 2004, type = {Correspondence}, title = {Intelligent pagiarists are the most dangerous}, jasnote = {"Scientists rewrite previous findings in different words \ldots and then during subsequent years forcefully claim that they have discovered new phenomena." See Feynman's Nobel address.}, } @inBook{Crease:03, author = {R. P. Crease}, title = {The Prism and the Pendulum}, chapter = 8, publisher = {Random House}, year = 2003, pages = {156--7}, jasquote = {Recollection of Herbert Goldstein: The young theorist Abraham Pais gave a presentation that was interrupted by Ehrenhaft, then pusing seventy and still championing the monopole cause. He approached the podium demanding to be heard, and was politely escorted out of the room. A young physicist named Herbert Goldstein was sitting next to his mentor, Arnold Siegert. ``Pais's theory is far crazier than Ehrenhaft's,'' Goldstein said to Siegert. ``Why do we call Pais a physicist and Ehrenhaft a nut?'' Siegert thought a moment. ``Because,'' he said, ``Ehrenhaft \emph{believes} his theory.''}, } @article{Budakian:04, author = {R. Budakian and H. J. Mamin and D. Rugar}, title = {Suppression of spin diffusion near a micron-size ferromagnet}, journal = {Physical Review Letters}, year = 2004, volume =92, number = 3, pages = {037205/1-4}, } @article{Mamin:03, author = {H. J. Mamin and R. Budakian and and B. W. Chui and D. Rugar}, title = {Detection and manipulation of statistical polarization in small spin ensembles}, journal = {Physical Review Letters}, year = 2003, number = 20, volume = 91, pages = {207604/1-4}, } @book{Abrahams:03, author = {M. Abrahams}, title = {The Ig Nobel Prizes}, publisher = {Dutton}, year = 2003, pages = {40--41}, jasnote = {In its later years, Lloyd's became a mess, the kind of mess that is awkwardly draped atop a larger mess, a larger mess that is somehow supported by a more massive mess, a massive mess that manages to conceal within itself the type of mess that beggars all description.}, } @article{Nielsen:98, author = {M. A. Nielsen and C. M. Caves and B. Schumacher and H. Barnum}, title = {Information-theoretic approach to quantum error correction and reversible measurement}, journal = {Proceedings of the Royal Society of London, Series A}, year = 1998, volume = 454, number = 1969, pages = {277--304}, jasnote = {Kraus review, references Schumacher: 96}, } @article{Schumacher:96, author = {B. Schumacher}, title = {Sending entanglement through noisy quantum channels}, journal = {Physical Review A}, year = 1996, volume = 54, number = 4, pages = {2614--2628}, jasnote = {Kraus operator review}, } @book{Kraus:83, author = {K. Kraus}, title = {States, Effects, and Operations: Fundamental Notions of Quantum Theory}, publisher = {Springer-Verlag}, year = 1983, jasnote = {good definition of A and B operators}, } @article{Gardiner:92, author = {C. W. Gardiner and A. S. Parkins and P. Zoller}, title = {Wave-function quantum stochastic differential equations and quantum-jump simulation methods}, journal = {Physical Review A}, year = 1992, volume = 46, pages = {4363Ð-4381}, jasnote = {good review of jump formalisms}, } @article{Barchielli:91, author = {A. Barchielli and J. Belavkin}, title = {Measurements continuous in time and a posteriori sets}, journal = {Journal of Physics A}, year = 1991, volume = 24, pages = {1495-1513}, } @article{Madeley:03, author = {C. R. Madeley}, title = {Diagnosing smallpox in possible bioterrorist attack}, journal = {The Lancet}, volume = 361, pages = {97--98}, year = 2003, jasnote = {Accuracy is vital because the consequences of a false positive or a false negative are equally bad. A false positive would cause unnecessary panic and a false negative would increase the danger of a major outbreak. ... Speed is almost as important as accuracy. ... To get a reliable answer, and anything less is virtually worthless, all these methods except electron microscopy require time, mostly measured in days to complete, and all require skill and current experience in doing the procedure. ... If the diagnosis of smallpox can be confirmed in minutes (or, just as importantly , specifically ruled out by confirming an excluding diagnosis such as varicella) deciding what to do with the patient(s), and where, becomes less pressing. Electron microscopy can provide a specific answer either way ("This is definitely a poxvirus, or "Definitely a herpes virus") and the result can be available within 30 minutes from receipt of the specimen.}, } @article{Henkel:99, author = {C. Henkel and S. P\"{o}tting and M. Wilkens}, title = {Loss and heating of particles in small and noisy traps}, journal = {Applied Physics B}, volume = 69, year = 1999, pages = {379--387}, jasnote = {beat us to Sidles:00xxx}, } @article{Sidles:03, author = {J. A. Sidles and J. L. Garbini and W. M. Dougherty and S.-H. Chao}, title = {The Classical and Quantum Theory of Thermal Magnetic Noise, with Applications in Spintronics and Quantum Microscopy}, journal = {Proceedings of the {IEEE}}, volume = 91, number = 5, pages = {799--816}, year = 2003, } @article{Amiet:00, author = { J.-P. Amiet and S. Wieger }, title = {Discrete {Q}- and {P}-symbols for spin s}, journal = {Journal of Optics B}, volume = 2, number = 2, pages = {118--120}, year = 2000, jasnote = {illustrates that P-representation is not unique}, } @article{Braunstein:91, author = {S. L. Braunstein and C. M. Caves and G. J. Milburn}, title = {Interpretation for a positive {P} representation }, journal = {Physical Review A}, year = 1991, volume = 43, number = 3, pages = {1153--9}, jasnote = {very good discussion "In general ... a density oeprator does not have a unique P-representation.} } @book{Rose:57, author = {M. E. Rose}, title = {Elementary Theory of Angular Momentum}, publisher = {John Wiley \& Sons}, year = 1957, } @book{Brink:68, author = {D. M. Brink and G. R. Satchler}, title = {Angular Momentum}, publisher = {Clarendon Press}, year = 1968, } @book{Wigner:59, author = {E. P. Wigner}, title = {Group Theory and its Application to the Quantum Mechanics of Atomic Spectra}, publisher = {Academic Press}, year = 1959, } @book{Wigner:31, author = {E. P. Wigner}, title = {Gruppentheorie}, publisher = {Friedrich Vieweg und Sohn}, year = 1931, pages = {168--180}, } @article{Radcliffe:70, author = {J. M Radcliffe}, title = {Some properties of coherent spin states}, journal = {Journal of Physics A}, year = 1971, volume = 4, pages = {313--323}, jasnote = { "It is straightforward to verify" Q-representation Reprinted in Klauder }, } @article{Perelomov:72, author = {A. M Perelomov}, title = {Coherent states for arbitrary {L}ie group}, journal = {Communications in Mathematical Physics}, year = 1972, volume = 26, pages = {222--236}, jasnote = { Good derivation of the P-representation (non-positive) Reprinted in Klauder }, } @inCollection{Klauder:84, author = {C. Klauder and B. S. Skagerstam}, title = {A Coherent States Primer}, booktitle = {Coherent States}, publisher = {World Scientific Publishing}, year = 1984, pages = {3--74}, jasnote = {A good primer} } @article{Kemph:03, author = {J. G. Kempf and J. A. Marohn}, title = {Nanoscale {F}ourier-transform imaging with magnetic resonance force microscopy}, journal = {Physical Review Letters}, year = 2003, volume = 90, number = 8, pages = {087601-1--087601-4}, } @book{Haba:99, author = {Z. Haba}, title = {Feynman Integral and Random Dynamics in Quantum Physics: A Probabilistic Approach to Quantum Dynamics}, publisher = {Kuwer Academic Publishers}, year = 1999, edition = {Third}, jasnote = {superior discussion of Lindblad equations, etc.}, } @inProceedings{Richardson:82, author = {M. C. Richardson}, title = {Basics of Solid State Lasers}, booktitle = {Lasers: Physics, Systems and Techniques}, year = 1982, institution = {Nato Advanced Study Institute}, note = {see eq.~4.9}, jasnote = {wrong Guoy phase}, } @book{Svelto:89, author = {O. Svelto}, title = {Principles of Lasers}, publisher = {Plenum Press}, year = 1989, edition = {Third}, note = {see eq.~4.129}, jasnote = {wrong Guoy phase}, } @book{Shimoda:86, author = {K. Shimoda}, title = {Introduction to Laser Physics}, publisher = {Springer-Verlag}, year = 1986, edition = {Second}, note = {see eq.~3.122}, jasnote = {wrong Guoy phase}, } @article{Krzywinski:03, author = {M. Krzywinski and Y. Butterfield}, title = {How we sequenced the SARS virus in five days}, journal = {Linux Journal}, year = 2003, pages={44}, month = {November}, } @article{Jones:98, author = {D. Heath Jones and J. Bland-Hawthorn}, title = {Parallelism of a Fabry-Perot Cavity at Micron Spacings}, journal = {Publications of the Astronomical Society of the Pacific}, year = {1998}, volume = {110}, month = {September}, pages = {1059Ð1066}, } @article{Chao:04, author = {S.-H. Chao and W. M. Dougherty and J. L. Garbini and J. A. Sidles}, title = {Nanometer-scale magnetic resonance imaging}, journal = {Review of Scientific Instruments}, year = 2004, volume = 75, number = 5, pages = {1175-1181}, } @misc{Sidles:02, author = {J. A. Sidles}, title = {Path integrals over measurement amplitudes: practical quantum foundations for signal processing and control }, year = 2002, note = {Arxiv preprint server.\protect\\ \url{http://arxiv.org/abs/quant-ph/0211108}}, } @misc{Sidles:04arxiv, author = {J. A. Sidles}, title = {Positive P-Representations of the Thermal Operator from Quantum Control Theory }, year = 2004, note = {Arxiv preprint server.\protect\\ \url{http://arxiv.org/abs/quant-ph/0401165}}, } @phdThesis{Chao:02, author = {S.-H. Chao }, title = {Acquisition and reconstruction of three-dimensional images by magnetic resonance force microscopy}, school = {University of Washington}, year = 2002, } @book{Gottfried:66, author = {K. Gottfried}, title = {Quantum Mechanics}, publisher = {W. A. Benjamin}, year = 1966, jasnote = {see Sections 32--36 for rotation groups}, } @book{Perelomov:86, author = {A. Perelomov}, title = {Generalized Coherent States and Their Applications}, publisher = {Springer-Verlag}, year = 1986, jasnote = {see eq 4.3.43 for a resolution of the identity. Also give Q-representation} } @article{Petroski:03, author = {H. Petrosky}, title = {Failure is Always an Option}, journal = {New York Times, August 29}, year = 2003, pages = {23}, jasnote = {Rather than following from science, engineered things lead it. The steam engine was developed before thermodynamics, and flying machines before aerodynamics. The sciences were invented to explain the accomplishments---and to analyze their shortcomings.}, } @article{Benabid:00, author = {F. Benabid and V. Chickarmane and , A. Di Virgilio and M. Fiorentino and A. Gaddi and P. LaPenna and G. Losurdo and D. Passuello and A. Vicere}, title = {The low frequency facility, {R}{\&}{D} experiment of the {VIRGO} project}, journal = {Journal of Optics B: Quantum and Seomclassical Optics}, year = 2000, volume = 2, number = 2, pages = {172--8}, jasnote = {documents that R1 = infinity, R2 = 3450 m, L = 3000 m}, } @article{Solimeno:91, author = {S. Solimeno and F. Barone and C. De Lisio and L. Di Fiore and L. Milano and G. Russo}, title = {{F}abry-{P}erot resonators with oscillating mirrors}, journal = {Physical Review A}, year = 1991, volume = 43, number = 11, pages = {6227--6240}, } @techReport{Coyne:01, author = {D. Coyne and D. Shoemaker}, title = {{R}\&{D} for {A}dvanced {LIGO} 2002--2006}, institution = {LIGO Project, document G010237-00-M}, year = 2001, } @techReport{Bhawal:02, author = {B. Bhawal and M. Evans and M. Rakhmanov and H. Yamamoto}, title = {{e}2e primitive module - reference manual}, institution = {LIGO Project, document T000047-03-E}, year = 2002, pages = {12}, jasnote = {documents right-handed, z-out, y-up convention'}, } @book{Svelto:89, author = {O. Svelto}, title = {Principles of Lasers}, publisher = {Plenum Press}, year = 1989, pages = {137--203}, jasnote = {darn good discussion of laser cavities and beam waist sizes}, } @book{Eberly:88, author = {P. W. Milonni and H. H. Eberly}, title = {Lasers}, publisher = {John Wiley and Sons}, year = 1988, pages = {484--500}, jasnote = {}, } @book{Thyagarajan:81, author = {K. Thyagarajan and A. K. Ghatak}, title = {Lasers: Theory and Applications}, publisher = {Plenum Press}, year = 1981, pages = {141--153}, jasnote = {good discussion of laser cavities}, } @article{Spehner:2002, author = {D. Spehner and M. Orszag}, title = {Quantum jump dynamics in cavity {Q}{E}{D}}, journal = {Journal of Mathematical Physics}, year = 2002, volume = 43, number = 7, pages = {3511--3537}, jasnote = {The opposite of our qubit Stern-Gerlach article}, } @book{Pinsky:1995, author = {R. G. Pinsky}, title = {Positive Harmonic Functions and Diffusion: an Integrated Analytic and Probabilistic Approach}, publisher = {Cambridge University Press}, city = {Cambridge}, year = 1995, jasnote = {the logical next book to read!}, } @book{Wasserman:92, author = {R. H. Wasserman}, title = {Tensors and Manifolds with Applications to Mechanics and Relativity}, publisher = {Oxford University Press}, year = 1992, jasnote = {see the discussion following page 29, Equation 3.2 for the dimensionality of product spaces. Use this to show that the product space of n spin-1/2 particles is spanned by 2^n basis vectors.}, } @article{Collins:03, author = {F. S. Collins and Eric D. Green and A. E. Guttmacher and M. S. Guyer}, title = {A vision for the future of genomics research.}, journal = {Nature}, year = 2003, pages = {839--847}, collinsquote = {page 846: \section{Quantum Leaps} It is interesting to speculate about potential revolutionary technical developments that might enhance research and clinical applications in a fashion that would rewrite entire approaches to biomedicine. The advent of the polymerase chain reaction, large-insert cloning systems and methods for low-cost, high-throughput DNA sequencing are examples of such advances that have already occurred.\\ \ldots The following is not intended to be an exhaustive list, but to provoke creative dreaming: [list concludes with] the ability to monitor the state of all proteins in a single cell in a single experiment."}, burnhamquote = {page 847, concluding quote (attributed to Daniel Burnham, architect): "Make no little plans; they have no magic to stir menÕs blood and probably will themselves not be realized. Make big plans; aim high in hope and work, remembering that a noble, logical diagram once recorded will not die, but long after we are gone will be a living thing, asserting itself with evergrowing insistency."}, } @book{Pace:1995, author = {S. Pace and G. and I. Lachow and D. Frelinger and D. Fossum and D. K. Wassem and M. Pinto}, title = {The Global Positioning System: Assessing National Policies}, publisher = {{RAND} Corporation}, number = {Report MR-614-OSTP}, chapter = {Appendix {B}: {G}{P}{S} History, Chronology, and Budgets}, year = 1995, jasquote = { Table B.2, page 270 \url{http://www.rand.org/publications/MR/MR614/#contents} page 270: Table B.3 Total GPS costs through 2016 are {\$}21.7 billion. (i.e., GPS is 30 X LIGO, just as LIGO is 30 X MOSAIC) page 243: Efforts to expand the fledgling GPS program suffered some growing pains during the development phase. The first setback was brought on by a 1979 decision by the Office of the Secretary of Defense (OSD) to cut {\$}500 million (approximately 30 percent) from the budget over the period FY81--FY86. As a result, the GPS program was restructured and the scope of the program reduced. The final satellite constellation was cut from 24 to 18 satellites (plus three satellites serving as on-orbit spares); Block II development satellites were dropped; and the design was scaled down in terms of weight, power, and nuclear and laser hardening. Plans for attainment of an early limited two-dimensional capability in 1981 were also dropped. Funding for GPS was somewhat unstable during the early stages of the program even though it received support from many elements of the services. Because GPS is a support system and not a standard weapon system with a clear mission and a history of well-defined operational concepts, early understanding of the value of the system was less straightforward than with tanks or aircraft. This increased the need to sell the program, particularly to potential users. The JPO addressed this problem, especially during Phase I, by emphasizing one of the more tangible capabilities of the system: increased bombing accuracy. The fact that GPS was a joint program also increased the need to sell the program to multiple services. No one service was anxious to bear the entire financial load for a support system that was to be used by all services. As a result, GPS had service support difficulties. For example, the program was zeroed out in 1980 through 1982, but was reinstated by OSD.It appears that OSD support contributed to the survival of the program. } } @article{Bromley:2003, author = {D. A. Bromley}, title = {What criteria should be used to establish funding priorities?}, journal = {Physics Today}, year = 2003, month = {June}, pages = {54--55}, jasquote = { page 55: "I can personally attest to the effectiveness of priority ranking as an approach to the making of enemies." also on page 55: "I suggest a specific approach wherein the priorities in any field of science and between fields would be based on objective answers to the following questions: \textbullet To what extent does the research have the potential of providing fundamental new understanding of our universe? \textbullet To what extent does the research have the potential of affecting other areas of scientific research? \textbullet to what extent does the research have the potential of leading to new generic technologies? \textbullet To what extent does the research contribute to national security, economic competitiveness, or improvement in our quality of life? \textbullet To what extent does the research hold promise of significant return on earlier scientific facility investments (for example, large telescopes, accelerators, of light sources)? \textbullet To what extent is the research at or near the international frontiers of work in the field?" }, } @book{Diamond:1992, author = {J. M. Diamond}, title = {The Third Chimpanzee: the Evolution and the Future of the Human Animal}, publisher = {HarperCollins}, year = 1992, jasquote = { From Epilogue: Nothing Learned and Everything Forgotten, page 366: "[New Guinea explorer Arthur Wichman] grew disillusioned as he realized that successive explorers committed the same stupidities again and again: unwarranted pride in overstated accomplishments, refusal to acknowledge disastrous oversights, ignoring the accomplishments of previous explorers, consequent repitition of previous errors, hence a long history of unnecessary sufferings and deaths. The bitter last sentence that concluded Wichman's last volume was: "Nothing learned, and everything forgotten!"}, } @book{Hoskin:2003, author = {M. Hoskin}, title = {The Herschel Partnership, as Viewed by Caroline}, publisher = {Science History Publications}, year = 2003, pages = {86}, jasquote = { William Hershel writes in 1785: "In a letter which Sir J. Banks laid before his Majesty, I have mentioned that it would require 12 or 15 hundred pounds to construct a 40-ft telescope, and that moreover the annual expenses attending the same instrument would amount to 150 or 200 pounds. As it was impossible to say exactly what some might be sufficient to finish so grand a work, I now find that many of the parts take up so much more time and labour of workmen, and more materials than I apprehended they would have taken, and that consequently my first estimate of the total expence will fall short of the real amount." Author M. Hoskin comments: "Not for the last time in the history of astronomy, an astronomer seeking support had been modest in his initial demands, knowing that the funding body, confronted later with a choice between writing off all the money spent so far or coughing up more, would cough up."}, } @book{Raven:1953, author = {C. E. Raven}, title = {Natural Religion and Christian Theology: Experience and Interpretation}, publisher = {Cambridge University Press}, year = 1953, pages = {112--113}, jasnote = {Every specimen differed from the rest, in detail from those of its own group, in total effect from those of others. Each was in itself a total design, satisfying in whole and parts, inviting one to concentrate one's whole attention upon it. To move from one to the other, to these the difference of impact, to wrk out the quality of this difference in the detailed modifications of the general pattern, this was a profoundly moving experience. Here is beauty---whatever the philosophers and critics who have never looked at a moth may say---beauty that rejoices and humbles, beauty remote from all that is meant by words like random or purposeless, utilitarian or materialistic, beauty in its impact and effects akin to the authentic encounter with God.}, } @book{Stephensen:1999, author = {N. Stephensen}, title = {Cryptonomicon}, publisher = {HarperCollins}, year = 1999, edition = {Perennial}, chapter = {{R}{A}{M}}, pages = {279}, jasquote = {from page 279: ``Sargeant Shaftoe!'' Root barks, doing such an effective impersonation of a Marine that Shaftoe and Benjamin both stiffen to attention.\\ ``Sir, Yes Sir!'' Shaftoe returns.\\ ``This is the first and last order I am going to give you, so listen carefully!'' Root insists.\\ ``Sir, Yes Sir!''\\ ``Sargeant Shaftoe, take me and the rest of this unit to Sweden!''\\ ``Sir, Yes Sir!'' Shaftoe hollers, and marches out of the cabin. page 131 "Don't talk to the Dentist. Ever. Not about anything. Not even about tech stuff. Any technical question he asks you is just a stalking horse for some business tactic that is as far beyond your comprehension as G\"{o}del's Proof would be to Daffy Duck."}, } @misc{Hilbert:1930, author = {D. Hilbert}, title = {Hilbert's 1920 radio address}, howPublished = {Audio recording and transcript}, editor = {J. T. Smith}, institution = {San Francisco State University}, url = {http://math.sfsu.edu/smith/Documents/HilbertRadio/}, year = 1930, jasquote = {file: HilbertRadio.pdf, HilbertRadio.mpg. "In fact, we donÕt master a theory in natural science until we have extracted its mathematical kernel and laid it completely bare." "We must know, we will know."}, } ^@misc{Coleridge:1791, author = {Samuel Taylor Coleridge}, title = {Letter to George Coleridge}, year = 1791, howPublished = {The Samuel Taylor Coleridge Archive}, url = {http://etext.lib.virginia.edu/stc/Coleridge/ascii_files/geometry_poem_letter.html }, jasquote = {I have often been surprised, that Mathematics, the quintessence of Truth, should have found admirers so few and so languid.---Frequent consideration and minute scrutiny have at length unravelled the cause---viz.---that though Reason is feasted, Imagination is starved; whilst Reason is luxuriating in it's [sic] proper Paradise, Imagination is wearily traveling on a dreary Desart [sic]. To assist reason by the stimulus of Imagination is the design of the following production. ... I have three strong champions to defend me against the attacks of Criticism: the Novelty, the Difficulty, and the Utility of the Work. (there follows a bad poetic presentation of the Pythagorean Theorem).}, } @book{Kay:93, author = {L. E. Kay}, title = {The Molecular Vision of Life: Caltech, the Rockefeller Foundation, and the Rise of the New Biology}, publisher = {Oxford University Press}, year = 1993, jasnote = {see reference 30, page 241, listing December 4 as the date of Pulings' submission}, } @article{Berman:03, author = {P. Berman}, title = {The Philospher of Islamic Terror}, journal = {New York Times Magazine}, year = 2003, volume = {March 23}, pages = {29}, jasquote = {[Sayyid] Qutb identified the kind of personal agony that Mohamed Atta and the suicide warriers of September 11 must have experienced in our own time. It was the agony of inhabiting a modern world of liberal ideas and achievements while feeling that true life exists somewhere else.}, } @article{Sachs:03, author = {S. Sachs}, title = {Egyptian Intellectual Speaks of the Arab World's Despair}, journal = {New York Times}, year = 2003, volume = {April 8}, pages = {B1}, jasquote = {Egyptian intellectual Ahmed Kamal Aboulmagd: "We should never lose hope, frustration is not an option. ... Many people are talking about the planet earth being no more a safe place for anyone, but I am optimistic. I believe dialogue is needed now, so we should not give in to desperation, to loss of hope, to pessimism. Rather we should act actively and continue the path of dialogue and the path of understanding, simply because we cannot afford the other consequence."}, } @article{Feynman:66, author = {R. P. Feynman}, title = {Nobel Lecture: The Development of the Space-Time View of Quantum Electrodynamics}, journal = {Physics Today}, month = {August}, year = 1966, pages = {31}, jasquote = {A useful quote for quantum measurement thoeory: "We are struck by the very large number of physical viewpoints and widely different mathematical formalisms that are all equivalent to one another."}, } @article{Beadle:48, author = {G. W. Beadle}, title = {Genes and Biological Enigmas}, journal = {American Scientist}, year = 1948, pages = {69}, volume = {36(1)}, jasnote = {"There can be no complete understanding of an organism in the absence of a knowledge of its evolutionary history" and "The agents of heredity are particulate."}, } @article{Warren:52, author = {S. Warren}, title = {The University and Science: Commensal or Parasite?}, journal = {American Scientist}, year = 1952, pages = {677-679}, volume = {40(4)}, jasnote = {Shields Warren: So long as science is supported without hindrance to other disciplines of learning, so long as it remains a free and open search for truth, so long as it is a stimulus to the exchange of ideas, it is a useful, nay, essential commensal. It adds to the total strength of the university. But subtract any one of these provisions and science becomes a parasite.}, } @inCollection{Cottrell:02, author = {A. H. Cottrell}, title = {Commentary: A brief view of work hardening}, booktitle = {Dislocations in Solids}, editor = {F. R. N Nabarro and M.S. Duesbery}, volume = 11, publisher = {Elsevier}, year = 2002, jasnote = {page xvi: The theory [of work hardening] is mainly still at the stage of being interpretive, not predictive. And it is very far from being a standard theory of physics, founded upon an agreed set of axioms, which lead to the master equations, from the solutions of which all the basic features of the subject unfold. It may never develop into such a theory. Work hardening is quite unique, unlike any other branch of physics science. While thoroughly physics in its elements, and obviously belonging to the `hard science' end of the inorganic world, its characteristics---huge populations of interacting individuals, competition and cooperation, organization and evolution of family groups---are more like those of biology; ecology in particular. It may be that the theory of work hardening will always be more Darwin than Newton.}, } @article{Forman:85, author = {P. Forman}, title = {Atomichron: the Atomic Clock from Concept to Commercial Product}, journal = {Proceedings of the IEEE}, volume = 73, pages = {1181--1204}, year = 1985, jasnote = {Under contract to the Army Signal Corps}, } @inProceedings{Schwarzschild:64, author = {M. Schwarzschild}, title = {Summary: Problems and Outlook}, booktitle = {Aspects of Stellar Evolution}, year = 1964, editor = {A. Beer and K. A. Strand}, pages = {4}, jasquote = {The value of a branch of science does not in itself guarantee the continuation of its flourishing. A branch of science, in spite of high intrinsic value, can wither and die if the scientific activities in it appear to consist of nothing but the straight continuation of the techniques and aims of the past. However valuable for getting results such a straight continuation of past activities might be ... it fails in one decisive respect. It does not provide the explicit challenge necessary to draw into the branch its fair share of bright young scientists.}, } @article{Paik:99, author = {D.-S. Paik and S.-E. Park and T.R. Shrout and W. Hackenberger}, title = {Dielectric and piezoelectric properties of perovskite materials at cryogenic temperatures}, journal = {Journal of Materials Science}, year = 1999, volume = 34, pages = {469--473}, jasnote = {strains of up to 1 per cent, little degradation at cryogenic temperatures (d31 5x-10x greater} } @article{Grosshans:03, author = {F. Grosshans and G. Van Assche and J. Wenger and R. Brouri and N. J. Cerf and P. Grangier}, title = {Quantum key distribution using gaussian-modulated coherent states}, journal = {Nature}, year = 3002, volume = 241, pages = {238--241}, jasnote = {cryptography}, } @article{Rasmussen:96, author = {N. Rasmussen}, title = {Making a machine instrumental: {R}{C}{A} and the wartime origins of biological electron microscopy in {A}merica, 1940-1945}, journal = {Studies in History and Philosophy of Science}, year = 2003, volume = 27, number = 3, pages = {311--339}, jasquote = {page 314: "As Zworykin [of RCA] realized, the frequent expert attention required by the Model A was a huge obstacle to its marketability." page 333 "the government ... granted model B production AA1 status, top priority." reflecting in part (page 334) "the wartime moral ideology of patriotic cooperation between industry and academia" SUpported by the OSRD (Office of Scientific Research and Development) ... of 58 model B's produced, only 12 used mainly for biology ... many of the rest lost to secret work on then-advanced fields like polymer resaerch..}, } ^@misc{Jones:03xxx, author = {M. P. A. Jones and C. J. Vale and D. Sahagun and B. V. Hall and E. A. Hinds}, title = {Thermally induced spin flips above an atom chip}, howpublished = {arXiv.org e-Print archive}, url = {http://arXiv.org/abs/quant-ph/0301018}, year = 2003, jasnote = {found magnetic thermal noise indiced flips at a distance of 27 microns at room temperature}, } ^@misc{Fisher:02xxx, author = {A. J. Fisher}, title = {Lower limit on decoherence induced by entangling two spatially-separated qubits}, howpublished = {arXiv.org e-Print archive}, url = {http://arXiv.org/abs/quant-ph/0211200}, year = 2002, jasnote = {found magnetic thermal noise indiced flips at a distance of 27 microns at room temperature}, } @book{Caporale:03, author = {L. H. Caporale}, title = {Darwin in the Genome: Molecular Strategies in Biological Evolution}, publisher = {McGraw-Hill}, year = 2003, pages = {201}, jasquotea = {Lynn Caporale, pp. 118: For the tumors and pathogens that threaten us, we can begin to pull back from hand-to-hand combat. We have, or will soon be getting, the battle plans of our skilled opponents. We have broken their simplest codes, and now we must focus on understanding their strategies---what keeps them going, what will make them turn left instead of right, climb the mountain instead of dig a bunker.}, jasquoteb = {pp. 201: The image of our isolated home, the Earth, an inviting blue world wreathed in white clouds circling in the deep blackness of space, should stop us in our tracks. It should spur us on to protect our planet, with its thin rim of air and its diverse gifts of life, but somehow we get distracted, day to day. So, too, should we take a step back and absorb the knowledge we carry within us , encoded in an ancient helical ribbon. Soon, when the view of our genome no longer is limited to a few thousand scientists in laboratories busily sorting it all out, when we can all look at it and understand it and talk about it, we will see our deep kinship to one another and our connection to all life on Earth. We were created together, and in the long run our fates are intertwined.}, jasquotec = {pp. 133: quotes Eli Whitney: One of my primary objectives is to form the tools so that the tools themselves shall fashion the work.}, } @book{Morrison:99, author = {R. Morrison}, title = {The Spirit in the Gene: Humanity's Proud Illusion and the Laws of Nature}, publisher = {Cornell University}, year = 1999, jasnote = {page = 198: Curiously, it is irrationality itself that serves as sword and shield in the hands of the true believer. The more unsupported and untestable the proposition, the greater the leap of faith required to grasp it. Consequently, the greater the satisfaction it engenders in those who safely make that daring leap, and the more energy and passion they expend to protect that investment. ... Faith conceals a genetic lure that in most circumstances is totally irresistable. The bait is an immediate return to our genetic womb. With one bold act of submission---and a quick retreat from reality---we can once more become members of a small embattled tribal group, mystically bonded to one another and inherently heroic. "We few, we happy few, we band of brothers." (Henry V, Acti IV, Scene iii). The urge to belong to a tribe remains incomparably seductive and thoroughly immune to rational accounting.}, } @book{Breuer:03, author = {H.-{P}. Breuer and F. Petruccione}, title = {The Theory of Open Quantum Systems}, publisher = {Oxford University Press}, year = 2002, chapter = {6.2}, pages = {320--321}, jasquote = {These guys note that the stochastic representation is not unique -- this is key to quantum cryptographic applications. Views as a piecewise deterministic process (PDP) with quantum jumps. Sad to say, not much cross reference to Michael Minsky! Even though 6.42 is essentially a Minsky-style path integral result.}, } @book{Hoddeson:02, author = {L. Hoddeson and V. Daitch}, title = {True Genius: The Life and Science of John Bardeen}, publisher = {Joseph Henry Press}, year = 2002, page = {245}, pages = {245--7}, jasquote = {John Bardeen's philosophy at Xerox Corporation, pages 245: "Invention does not occur in a vacuum \ldots [most advances] are made in response to a need, so that it is necessary to have some sort of practical goal in mind while the basic research is being done; otherwise it may be of little value." P. 247 "There is really no sharp dividing line between basic and applied research." Charles Schreiffer, page 182: "The spirit will not be aroused in the student by one who is himself not filled with it."}, } @article{Irvine:02, author = {A. Abbott}, title = {Into Unknown Territory}, journal = {Nature}, volume = 420, pages = {600--601}, year = 2002, jasquote = {quotes Robert Irvine, "The inside of a cell is a thick soup of proteins talking to each other in ways we just don't understand."}, } @book{Kashiwa:97, author = {T. Kashiwa and Y. Ohnuki and M. Suzuki}, title = {Path Integral Methods}, publisher = {Clarendon Press, Oxford}, year = 1997, Chapter = {3.4}, pages = {119--130}, jasnotes = {Good section on spin path integrals}, } @book{Schulman:81, author = {L. S. Schulman}, title = {Techniques and Applications of Path Integration}, publisher = {John Wiley and Sons}, year = 1981, chapter = {22--24}, jasnotes = {Good section on spin path integrals. Very humorous!}, } @article{Hilbert:00, author = {G. M. Duyk}, title = {Sharper tools and simpler methods}, journal = {Nature Genetics Supplement}, volume = 32, pages = {465--468}, year = 2002, jasquote = {quotes David Hilbert, International Congress of Mathematicians, Paris 1999: Every real advance goes hand-in-hand with the invention of sharper tools and simpler methods.}, } @article{Smoot:90, author = {G. Smoot and C. Bennett and R. Weber and J. Maruschak and R. Ratliff and M. Janssen and J. Chitwood and L. Hilliard and M. Lecha and R. Mills and R. Patschke and C. Richards and C. Backus and J. Mather and M. Hauser and R. Weiss and D. Wilkinson and S. Gulkis and N. Boggess and E. Cheng and T. Kelsall and P. Lubin and S. Meyer and H. Moseley and T. Murdock and R. Shafer and R. Silverberg and E. Wright}, title = {COBE differential microwave radiometers: instrument design and implementation}, journal = {Astrophysical Journal}, year = 1990, volume = 360, pages = {685--95}, jasquote = {COBE == Cosmic Background Explorer. "a differential radiometer is a device whose output voltage is proportional to the difference in power received by two antennas ... the use of a differential radiometer obviates the need for making absolute measurements with accuracy at the 10^-4 level ... this reduces the need for gain stability ... signals that arise from asymmetries in the instrument will be reduced further by the orbital and precessional switching ... it is important to ensure that nothing internal to the radiometer changes synchronously with any of these modulation periods.}, } @article{Braginsky:97, author = {V. B. Braginsky and M. L. Gorodetsky and F. Ya. Khalili}, title = {Optical bars in gravitational wave antennas}, journal = {Physics Letters A}, year = 1997, volume = {232(2)}, pages = {340--8}, } @article{Braginsky:02, author = {V. B. Braginsky and S. P. Vyatchanin}, title = {Low quantum noise tranquilizer for FabryÐPerot interferometer}, journal = {Physics Letters A}, year = 2002, pages = {228--234}, volume = 293, jasnote = {We discuss the possibility to introduce low noise damping produced by light into mechanical oscillator (one of the FabryÐ Perot (FP) resonator mirrors is the mechanical resonator). Pumping FP resonator, by light detuned from resonance one can create the positive or negative rigidity in mechanical oscillator. Such a rigidity being introduced with delay (of the order of relaxation time of FP resonator) is equivalent to additional low noise damping. We propose to introduce this damping to tranquilize (to depress) parametric oscillatory instability in FP interferometer (Phys. Lett. A 287 (2001) 331) which is undesirable in laser gravitational wave antennae. Note: fluctuational force induced by damping.}, } @article{Braginsky:01c, author = {V. B. Braginsky and F. Ya. Khalili and P. S. Volikov}, title = {The analysis of table-top quantum measurement with macroscopic masses}, journal = {Physics Letters A}, year = 2001, pages = {31--38}, volume = {287(1--2)}, jasnote = {The analysis of a table-top quantum experiment with a mechanical test mass is presented. The scheme of the experiment is based on two principles: the difference between the free test mass and the oscillator sensitivity standard quantum limits, and the use of mechanical rigidity produced by an optical pumping field in a Fabry-Perot resonator to convert the free test mass into the mechanical oscillator having very low intrinsic noise. The analysis shows that proposed scheme allows one to overpass the free test mass standard quantum limit by the factor approximately=0.1}, } @article{Braginsky:98, author = {V. B. Braginsky}, title = {Decoherence and quantum nondemolition measurements in the {L}{I}{G}{O} project}, journal = {Physica Scripta}, volume = {T76}, pages = {122--126}, year = 1998, jasnote = {"optimally pumped and tuned Fabry-Perot resonators act like mechanical bars." "Several unsolved problems in the quantum theory of measurement" "To propose and analyze QND measurement schemes for any observable 25. "}, } @article{Buonanno:02b, author = {A. Buonanno and Y. Chen}, title = {Laser-interferometer gravitational-wave optical-spring detectors}, journal = {Classical and Quantum Gravity}, volume = 19, pages = {1569--1574}, year = 2002, jasnote = {The radiation-pressure force acting on the mirrors not only disturbs the motion of the free masses randomly due to quantum fluctuations, but also and more fundamentally, makes them respond to forces as though they were connected to an (optical) spring with a specific rigidity. This oscillatory response gives rise to a much richer dynamics than previously known, which enhances the possibilities for reshaping the LIGO-IIÕs noise curves. However, the opticalÐmechanical system is dynamically unstable and an appropriate control system must be introduced to quench the instability ... and a much more careful and precise study of the control system should be carried out, including various readout schemes [14], before any practical implementation.}, } @article{Buonanno:01a, author = {A. Buonanno and Y. Chen}, title = {Optical noise correlations and beating the standard quantum limit in advanced gravitational-wave detectors}, journal = {Classical and Quantum Gravity}, volume = 18, pages = {L95--L101}, year = 2001, jasnote = {Braginsky and colleagues have shown that the test-mass wave-function aspect of the uncertainty principle is irrelevant to the operation of a GW interferometer.}, } @article{Buonanno:01b, author = {A. Buonanno and Y. Chen}, title = {Quantum noise in second generation, interferometric, signal-recycled laser gravitational-wave detectors}, year = 2001, journal = {Physical Review D}, volume = {64(4)}, pages = {042006/1--21}, jasnote = {Summarizes the present working model for LIGO noise. Quotes SQL for general relativity S_h = 8 \hbar/(m \Omega^2 L^2). More dubiously, quotes V.B. Braginsky, M.L. Gorodetsky, F.Ya. Khalili, A.B. Matsko, K.S. Thorne and S.P. Vyatchanin, Noise in gravitational-wave detectors is not influenced by test-mass quantization, in preparation. For peer review, see V.B. Braginsky, M.L. Gorodetsky and F. Ya. Khalili, Phys. Lett. A 232 (1997) 340; V.B. Braginsky and F. Ya. Khalili, Phys. Lett. A 257 (1999) 241.}, } @article{Buonanno:02a, author = {A. Buonanno and Y. Chen}, title = {Signal recycled laser-interferometer gravitational-wave detectors as optical springs}, journal = {Physical Review D}, volume = {65(4)}, pages = {042001/1-26}, year = 2002, jasnote = {Quotes SQL for general relativity S_h = 8 \hbar/(m \Omega^2 L^2).}, } @article{Braginsky:03, author = {V. B. Braginsky and M. L. Gorodetsky and F. Ya. Khalili and A. B. Matsko and K. S. Thorne and S. P. Vyatchanin}, title = {The noise in gravitational-wave detectors and other classical-force measurements is not influenced by test-mass quantization}, year = 2003, journal = {Physical Review D}, volume = {67(8)}, pages = {82001-1-18}, } @misc{Penrose:02, author = {W. Marshall and C. Simon and R. Penrose and D. Bouwmeester}, title = {Towards quantum superpositions of a mirror}, eprint = {quant-ph/0210001}, jasnote = {macroscopic superposition based on *one* photon effects}, } @article{Khalili:01, author = {F. Ya. Khalili}, title = {Frequency-dependent rigidity in large-scale interferometric gravitational-wave detectors}, journal = {Physics Letters A}, volume = 288, year = 2001, pages = {251--256}, jasnote = {recognizes that rigidity is frequency-dependent, allows evasion of the SQL}, } @book{Abragam:61, author = {A. Abragam}, title = {Principles of Nuclear Magnetism}, publisher = {Clarendon, Oxford}, year = 1961, } @book{Abramowitz:65, editor = {M. Abramowitz and I. A. Stegun}, title = {Handbook of Mathematical Functions}, publisher = {US Government Printing Office}, address = {Washington}, edition = {10th}, chapter = 5, year = 1964, } @book{Alberts:94, author = {B. Alberts and D. Bray and J. Lewis and M. Raff and K. Roberts and J. D. Watson}, title = {Molecular Biology of the Cell}, publisher = {Garland, New York}, edition = {3rd}, year = 1994, } @article{Albrecht:91, author = {T. R. Albrecht and D. Gr\"utter and D. Horne and D. Rugar}, title = {Frequency modulation detection using high-{Q} cantilevers for enhanced force microscope sensitivity}, journal = {Journal of Applied Physics}, year = 1991, volume = 69, number = 2, pages = {668--73}, } @book{Alibek:99, author = {K. Alibek}, title = {Biohazard}, publisher = {Random House}, year = 1999, jasnote = {This is an interview with former Soviet Colonel and doctor Kanatjan Alibekov, now known as Ken Alibek. Dr. Alibek was the 1st Deputy Chief of the secret Soviet germ warfare program, Biopreparat, from 1988 to 1992. In 1992, Dr. Alibek defected to the United States and has since spent his time briefing U.S. military, intelligence, and medical officials about biological weapons and defenses. Dr. Alibek holds both M.D. and PhD. degrees.}, } @book{Altshuler:64, author = {S. A. Al'tshuler and B. M. Kozyrev}, title = {Electron Paramagnetic Resonance}, publisher = {Academic Press}, year = 1964, city = {New York and London}, jasnote = {The best source on dilute organic free radicals}, } @article{Amrein:89, author = {M. Amrein and R. Durr and A. Stasiak and H. Gross and G. Travaglini}, title = {Scanning tunneling microscopy of uncoated rec{A-DNA} complexes}, journal = {Science}, year = 1989, volume = 243, number = 4899, pages = {1708--11}, } @article{Anderson:52, author = {T. W. Anderson and D. A. Darling}, journal = {Annals of Mathematical Statistics}, title = {Asymptotic theory of certain ``goodness of fit'' criteria based on stochastic processes}, volume = 23, pages = {193--212}, year = 1952, } @article{Ascoli:96, author = {C. Ascoli and P. Baschieri and C. Frediani and L. Lenci and M. Martinelli and G. Alzetta and R. M. Celli and L. Pardi}, title = {Micromechanical detection of magnetic resonance by angular momentum absorption}, journal = {Applied Physics Letters}, year = 1996, volume = 69, number = 25, pages = {3920--2}, } @article{Awschalom:01, author = {R. K. Kawakami and Y. Kato and M. Hanson and I. Malajovich and J. M. Stevens and E. Johnston-Halperin and G. Salis and A. C. Gossard and D. D. Awschalom}, title = {Ferromagnetic Imprinting of Nuclear Spins in Semiconductors}, journal = {Science}, volume = 294, pages = {131--4}, year = 2001, jasnote = {very good treatise on dynamic polarization}, } @book{Balescu:75, author = {R. Balescu}, title = {Equilibrium and nonequilibrium statistical mechanics}, publisher = {Wiley}, address = {New York}, year = 1975, pages = {663--699}, jasnote = {These pages discuss the fluctuation-dissipation theorem}, } @article{Baltz:91, author = {T. Baltz and C. Giroud and F. Bringaud and H. Eisen and C. Jacquemot and C. W. Roth}, title = {Exposed epitopes on a Trypanosoma equiperdum variant surface glycoprotein altered by point mutations}, journal = {EMBO}, year = 1991, volume = 19, pages = {1653-9}, jasnote = {African trypanosomes are covered by a dense protein layer that is immunologically distinct on different trypanosome isolates and is termed the variant surface glycoprotein (VSG). The different VSGs are expressed in a general order, where some VSGs appear preferentially early in infection and others only later. The exposed epitopes on a late antigen, VSG 78, of T.equiperdum were studied by the technique of monoclonal antibody (MAb) escape selection.}, } @article{Barton:91, author = {G. Barton}, title = {On the fluctuations of the Casimir force}, journal = {Journal of Physics A}, volume = {24(5)}, pages = {991--1005}, year = 1991, } @article{Barton:91a, author = {G. Barton}, title = {On the fluctuations of the Casimir forces II: The stress-correlation function}, journal = {Journal of Physics A}, volume = {24(23)}, pages = {5533--51}, year = 1991, } @inBook{Barton:94, booktitle = {Advances in Atomic, Molecular and Optical Physics, Supplement 2}, author = {G. Barton}, title = {New aspects of the casimir effect: fluctuations and radiative reaction}, pages = {425--458}, publisher = {Academic Press}, address = {San Diego}, year = 1994, } @article{Bartunik:92, author = {H. D. Bartunik and L. J. Bartunik and H. Viehmann}, title = {Time resolved {X}-ray diffraction studies of enzymes under cryoconditions}, journal = {Phil. Trans. R. Soc. Lond.}, year = 1992, volume = 340, number = 1647, pages = {209--20}, } @inCollection{Bateman:54, author = {H. Bateman}, title = {Tables of {I}ntegral {T}ransforms}, booktitle = {Bateman Manuscript Project}, volume = 2, editor = {A. Erd{\'{e}}lyi}, publisher = {McGraw-Hill}, city = {New York}, year = 1954, jasnote = {Chapter {XIV} discusses Stieltjies transforms. } } @inCollection{Baum:01, author = {D. A. Baum and M. J. Donoghue}, title = {A likelihood framework for the phylogenetic analysis of adaptation}, booktitle = {Adaptationism and Optimality}, editor = {S. H. Orzack and E. Sober}, publisher = {Cambridge University Press}, pages = {219--41}, year = 2001, jasnote = {Use of geological metaphors in evolutionary theory, evolutionay biology as a guidebook in which not only the peaks and heights are of interest, but also the surrounding topography. See Baum:01, Gilchrist:01,Orzack:01. }, } @article{Bennink:01, author = {M. L. Bennink and S. H. Leuba and G. H. Leno and J. Zlatanova and B. G. de Grooth and J. Greve}, title = {Unfolding individual nucleosomes by stretching single chromatic fibers by optical tweezers}, journal = {Nature Structural Biology}, year = 2001, volume = 8, number = 7, pages = {606--610}, jasnote = {Summary: DNA wrapping around individual histones is prevented by 10 pN tension, unwrapping requires 20-40 pN of tension. Background noise is about +/- 2 pN in unspecified bandwidth. Thus, biological forces are of order 10 pN, about 10^7 aN.} } @unpublished{Berman:00, author = {G. P. Berman and F. Borgonovi and G. Chapline and S. A. Gurvitz and P. C. Hammel and V. I. Tsifrinoovish}, title = {Formation and Dynamics of a Schrodinger-Cat State in Continuous Quantum Measurement}, note = {LANL preprint quant-ph/0101035 (\texttt{http://xxx.lanl.gov})}, jasnote = {Failes to cite Sidles, Garbini, and Drobny}, } @article{Berman:00a, author = {G. P. Berman and G. D. Doolen and P. C. Hammel and V. I. Tsifrinovich}, title = {Solid-state nuclear-spin quantum computer based on magnetic resonance force microscopy}, journal = {Physical Review B}, year = 2000, volume = 61, number = 21, pages = {14694--9}, } @article{Berman:00b, author = {G. P. Berman and G. D. Doolen and V. I. Tsifrinovich}, title = {Solid-state quantum computation. A new direction for nanotechnology}, journal = {Superlattices and Microstructures}, year = 2000, volume = 27, number = {2-3}, pages = {89--104}, jasnote = {Proposes MRFM quantum computer}, } @article{Berman:00c, author = {G. P. Berman and V. I. Tsifrinovich}, title = {Modified approach to single-spin detection using magnetic resonance force microscopy}, journal = {Physical Review B}, year = 2000, volume = 61, number = 5, pages = {3524--7}, } @article{Berman:99, author = {G. P. Berman and D. K. Campbell and G. D. Doolen and K. E. Nagaev}, title = {Electron-nuclear spin dynamics in a mesoscopic solid-state quantum computer}, journal = {Microelectronic Engineering}, year = 1999, volume = 47, number = {1--4}, pages = {227--9}, } @book{Berry:66, author = {B. S.Berry and A. S. Nowick}, title = {Physical Acoustics Vol. IIIA}, publisher = {Academic, New York}, year = 1966, } @book{Bertero:98, author = {M. Bertero and P. Boccacci}, title = {Introduction to Inverse Problems in Imaging}, publisher = {Institute of Physics Publishing}, city = {Bristol and Philadelphia}, year = 1998, jasnote = {page 51 defines the nomenclature as follows: Ours Theirs G K Green function impulse response function, or point spread function (PSF) sample object data image }, } @article{Binnig:82, author = {G. Binning and H. Rohrer and C. Gerber and E. Weibel}, title = {Surface Studies by scanning tunneling microscopy}, journal = {Sensors and Actuators}, year = 1982, volume = 49, number = 1, pages = {57--61}, } @article{Binnig:82b, author = {G. Binnig and H. Rohrer and C. Gerber and E. Weibel}, title = {Tunneling through a controllable vacuum gap}, journal = {Applied Physics Letters}, year = 1982, volume = 40, number = 2, pages = {178--80}, } @article{Binnig:83, author = {G. Binnig and H. Rohrer and C. Gerber and E. Weibel}, title = {7*7 reconstruction on {S}i(111) resolved in real space}, journal = {Physical Review Letters}, year = 1983, volume = 50, number = 2, pages = {120--3}, } @article{Binnig:86, author = {G. Binnig and C. F. Quate and C. Gerber}, title = {Atomic force microscope}, journal = {Physical Review Letters}, year = 1986, volume = 56, number = 9, pages = {930--3}, } @book{Bjorken:64, author = {J. D. Bjorken and S. D. Drell}, title = {Relativistic Quantum Mechanics}, publisher = {McGraw-Hill}, year = 1964, } @book{Bjorken:65, author = {J. D. Bjorken}, title = {Relativistic Quantum Fields}, publisher = {McGraw-Hill}, address = {New York}, year = 1965, note = {see Section~15.2.}, } @book{Blair:91, author = {D. G. Blair}, title = {The Detection of Gravitational Waves}, publisher = {Cambridge Univ. Press, Cambridge}, year = 1991, } @article{Bloembergen:59, author = {N. Bloembergen and S. Shapiro and P. S. Pershan and J. O. Artman}, title = {Cross-relaxation in spin systems}, journal = {Physical Review}, year = 1959, volume = 114, number = 2, pages = {445--459}, } @inProceedings{Bloom:93, author = {M. Bloom}, editor = {B. Maraviglia}, title = {Nuclear Magnetic Double Resonance}, booktitle = {Proceedings of the International School of Physics `Enrico Fermi'}, year = 1993, address = {Amsterdam}, publisher = {North Holland}, pages = {473--84}, } @inProceedings{Bonn:96, author = {D. A. Bonn and W. N. Hardy}, title = {Microwave surface impedance of high temperature superconductors}, booktitle = {Physical Properties of High Temperature Superconductors V}, editor = {Donald M. Ginsberg}, publisher = {World Scientific}, year = 1996, pages = {9--97}, jasnote = {The temperature dependence of the conductivity in superconductors has been much studied and is well understood. At finite temperatures a mixture of superconducting and normal phase charge carriers is present, and in consequence the conductivity has both real and imaginary parts. The resulting theory of energy dissipation is quite complicated. For a review of the literature, including experimental measurements, see here ...}, } @article{Bosciano:86a, author = {R. Bosciano and F. M. Gelardi and R. N. Mantegna}, title = {Spectral diffusion and saturation kinetics in inhomogenous systems}, journal = {Journal of Magnetic Resonance}, year = 1986, volume = 70, pages = {251--261}, } @article{Bosciano:86b, author = {R. Bosciano and F. M. Gelardi and R. N. Mantegna}, title = {The experimental detection of spectral diffusion by the saturation transient method}, journal = {Journal of Magnetic Resonance}, year = 1986, volume = 70, pages = {262--269}, } @article{Braginsky:99, author = {V. B. Braginsky and F. Ya. Khalili}, title = {Low noise rigidity in quantum measurements}, journal = {Physics Letters A}, year = 1999, volume = 257, number = {5--6}, pages = {227--341}, jasnote = {good reference for stroboscopic QND}, } @article{Brown:86, author = {L. S. Brown and G. Gabrielse}, title = {Geonium theory: physics of a single electron or ion in a {P}enning trap}, journal = {Review of Modern Physics}, year = 1986, volume = 58, number = 1, pages = {233--313}, } @book{Brown:92, author = {L. S. Brown}, title = {Quantum Field Theory}, publisher = {Cambridge University Press}, year = {1992}, chapter = {1}, } @article{Bruce:56, author = {C. R. Bruce and R. E. Norberg and G. E. Pake}, title = {Radiation Damping and Resonance Shapes in High Resolution Nuclear Magnetic Resonance}, journal = {Physical Review}, volume = 104, pages = {419--420}, year = 1956, jasnote = {Shows that lumped-circuit elelectrical parameters can modulate the damping times of spins}, } @article{Bruines:82, author = {J. J. P. Bruines and V. J. de Waal and J. E. Mooj}, title = {Comment on: '{DC SQUID}: noise and optimization' by {T}esche and {C}larke}, journal = {Journal of Low Temperature Physics}, year = 1982, volume = 46, pages = {383--96}, } @article{Bruland:95, author = {K. J. Bruland and J. Krzystek and J. L. Garbini and J. A. Sidles}, title = {Anharmonic modulation for noise reduction in magnetic resonance force microscopy}, journal = {Review of Scientific Instruments}, year = 1995, volume = 66, number = 4, pages = {2853--6}, jasnote = {This article describes the first MRFM experiment performed at the University of Washington, or indeed by any MRFM group other than the IBM group. It provided independent confirmation that MRFM theory and experiment are in good accord. The novel modulation scheme employed in this experiment (anharmonic magnetic mixing within the sample) demonstrates the third of four possible interaction Hamiltonians in a systematic classification of all terms up to third order in applied fields (see the discussion of \cite{Dougherty:96}).}, } @article{Bruland:96, author = {K. J. Bruland and J. L. Garbini and W. M. Dougherty and J. A. Sidles}, title = {Optimal control of force microscope cantilevers. {II}. {M}agnetic coupling implementation}, journal = {Journal of Applied Physics}, year = 1996, volume = 80, number = 4, pages = {1959--64}, jasnote = {This article is the experimental companion to \cite{Garbini:96}. It is demonstrated that near-optimal levels of cantilever control are achievable in practice, by a technique in which magnetic torques are applied to the cantilever tip by an external coil. Practical circuits are presented for implementing optimal controlers using off-the-shelf electronic components. A broad range of controllers are implemented and shown to yield satisfactory agreement with theoretical expectations for optimal control.}, } @article{Bruland:98a, author = {K. J. Bruland and J. L. Garbini and W. M. Dougherty and J. A. Sidles}, title = {Optimal control of ultrasoft cantilevers for force microscopy}, journal = {Journal of Applied Physics}, year = 1998, volume = 83, pages = {3972--3977}, } @article{Bruland:98b, author = {K. J. Bruland and W. M. Dougherty and J. L. Garbini and S. H. Chao and J. A. Sidles}, title = {Force-detected magnetic resonance in a field gradient of 250,000 Tesla per meter}, journal = {Applied Physics Letters}, year = 1998, volume = 73, pages = {3159--3161}, } @article{Bruland:99, author = {K. J. Bruland and J. L. Garbini and W. M. Dougherty and S. H. Chao and S. E. Jensen and J. A. Sidles}, title = {Thermal tuning of a fiber-optic interferometer for maximum sensitivity}, journal = {Review of Scientific Instruments}, volume = 70, pages = {3542-3544}, year = 1999, } @article{Brun:97, author = {T. A. Brun}, title = {Quantum jumps as decoherent histories}, journal = {Physical Review Letters}, year = 1997, volume = 78, pages = {1833Ð-1837}, jasnote = {Good overview of SSE formalism}, } @article{Buser:90, author = {R. A. Buser and N. F. de Rooij}, title = {Very high {Q}-factor resonators in monocrystalline silicon}, journal = {Sensors and Actuators A}, year = 1990, volume = 21, pages = {323--7}, } @article{Caves:80, author = {C. M. Caves}, title = {Quantum-mechanical radiation-pressure fluctuations in an interferometer}, journal = {Physical Review Letters}, year = 1980, volume = 45, number = 2, pages = {75--79}, jasnote = {"The rigorous analysis reveals two different, but equivalent, points of view on the origin of the relevant radiation pressure fluctuations. The first point of view identifies the beam splitter as the culprit ... if too many photons go down one arm, two few go down the other, and this is precisely what is necessary to produce a \sqrt{N} fluctuating force. ... The second point of view focuses on vacuum (zero-point) fluctuations in the electromagnetic field. These vacuum fluctuations produce the required \sqrt{N} fluctuating force."}, } @article{Caves:81, author = {C. M. Caves}, title = {Quantum-mechanical noise in an interferometer}, journal = {Physical Review D}, year = 1981, volume = 23, number = 8, pages = {1693--708}, jasnote = {Caves' eq. 1.2: Optimum input power P = 1/2 (m c^2/\tau) (1/\omega\tau)(1/b^2) where "b is the number of bounces at each end mirror"}, } @article{Caves:86, author = {C. M. Caves}, title = {Quantum mechanics of measurements distributed in time. {A} path-integral formulation}, journal = {Physical Review D}, year = 1986, volume = 33, number = 6, pages = {1643--1655}, jasnote = {Defines \emph{resolution amplitude} = \pho(x,xmeasure,n)}, } @inCollection{Caves:86b, author = {C. M. Caves}, title = {Measurements distributed in time}, booktitle = {Quantum Measurement and Chaos}, editor = {R. R. Pike and S. Sarkar}, pages = {195--208}, publisher = {Plenum Press}, year = 1986, jasnote ={Explicitly states that resolution amplitudes include the effects of back action.}, } @article{Caves:87a, author = {C. M. Caves}, title = {Quantum mechanics of measurements distributed in time. {II}. {C}onnections among formulations}, journal = {Physical Review D}, year = 1987, volume = 35, number = 6, pages = {1815--1830}, jasnote = {Continuation of Caves:86}, } @article{Caves:87b, author = {C. M. Caves and G. J. Milburn}, title = {Quantum-mechanical model for continuous position measurements}, journal = {Physical Review A}, year = 1987, volume = 36, number = 12, pages = {5543--5555}, jasnote = {Uses the notion of a resolution amplitude (defined in an earlier Caves article). Meters defined abstractly.} } @unpublished{Celera:01, author = {Celera}, title = {Celera Mission Statement}, note = {Available on-line at: \\ ``\texttt{http://www.celera.com/company/company.cfm}''}, year = 2001, } @article{Chabot:99, author = {M. D. Chabot and J. T. Markert}, title = {Microfabrication of single-crystal multiple torsion oscillators}, journal = {Proceedings of the SPIE, The International Society for Optical Engineering}, year = 1999, volume = 3875, pages = {104--12}, jasnote = {University of Texas MRFM group}, } @article{Chan:97, author = {D. C. Chan and D. Fass and J. M. Berger and P. S. Kim}, title = {Core structure of gp41 from the HIV Envelope Glycoprotein}, journal = {Cell}, volume = 89, pages = {263-273}, year = 1997, jasnote = {The envelope glycoprotein of HIV-1 consists of a complex of gp120 and gp41. gp120 determines viral tropism by binding to target-cell receptors, while gp41 mediates fusion between viral and cellular membranes. ... this article attempts to establish structure-function relations which describe the fusion process.}, } @article{Chen:91, author = {C. J. Chen}, title = {In situ testing and calibration of tube piezoelectric scanners}, journal = {Ultramicroscopy}, year = 1991, volume = {42-44}, pages = {1653--1658}, } @article{Chen:94, author = {G. Y. Chen and R. J. Warmack and T. Thundat and D. P. Allison and A. Huang}, title = {Resonance response of scanning force microscopy cantilevers}, journal = {Review of Scientific Instruments}, year = 1994, volume = 65, number = 8, pages = {2532--7}, } @article{Cho:94, author = {Y. Cho and S. Gorina and P. D. Jeffrey and N. P. Pavletich}, title = {Crystal Structure of a p53 tumor suppressor-{DNA} complex: understanding tumorigenic mutations}, journal = {Science}, year = 1994, volume = 265, number = 5170, pages = {346--55}, } @article{Christendat:00, author = {D. Christendat and A. Yee and A. Dharamsi and Y. Kluger and A, Savchenko and J. R. Cort and V. Booth and C. D. Mackereth and V. Saridakis and I. Ekiel and G. Kozlov and K. L. Maxwell and N. Wu and L. P. McIntosh and K. Gehring and M. A. Kennedy and A. R. Davidson and E. F. Pai and M. Gerstein and A. M. Edwards and C. H. Arrowsmith}, title = {Structural proteomics of an archeon}, journal = {Nature Structural Biology}, year = 2000, volume = 7, number = 10, page = {903--908}, } @book{Clarke:1990, author = {J. Clarke}, title = {Superconducting Devices}, publisher = {Academic, New York}, year = 1990, } @article{Clore:94, author = {G. M. Clore and J. G. Omichinski and K. Sakaguchi and N. Zambrano and H. Sakamoto and E. Appella and A. M. Groneborn}, title = {High-resolution structure of the oligomerization domain of p53 by multidimensional {NMR}}, journal = {Science}, year = 1994, volume = 265, number = 5170, pages = {346--55}, } @book{Cory:92, author = {D. G. Cory}, title = {Annual Reports on NMR Spectroscopy}, publisher = {Academic Press, London}, year = 1992, } @book{CRC:99, editor = {D. L. Lide}, edition = {80th}, title = {Handbook of Chemistry and Physics}, address = {New York}, publisher = {CRC Press}, year = 1999, jasnote = {Iron conductivities are: T 10^{-8} Ohm-meter, 1 0.0225; 10 0.0238; 20 0.0287; 40 0.0758; 60 0.271; 80 0.693; 100 1.28; 150 3.15; 200 5.20; 273 8.57}, } @article{Croft:01, author = {D. Croft and G. Shed and S. Devasia}, title = {Creep, Hysteresis, and Vibration Compensation for Piezoactuaors: Atomic Force Microscopy Application}, journal = {Journal of Dynamic Systems, Measurement and Control}, volume = 123, pages = {35--43}, year = 2001, } @article{Darling:57, author = {D. A. Darling}, journal = {Annals of Mathematical Statistics}, volume = 28, title = {The Kolmogorov-Smirnov, Cramer-von Mises tests}, pages = {823--838}, year = 1957, } @book{Darnell:90, author = {J. E. Darnell}, title = {Molecular Cell Biology}, publisher = {Scientific American Books, New York}, edition = {3rd}, year = 1990, } @unpublished{DARPA:01, author = {DARPA}, title = {{DARPA} Mission Statement}, note = {Available on-line at: ``\texttt{http://www.darpa.mil/}''}, year = 2001, } @unpublished{DARPA:98, author = {DARPA/DSO}, title = {Report entitled ``{D}efense {A}dvanced {R}esearch {P}rojects {A}gency: {T}echnology {T}ransition''}, note = {GPO Item Number 0306, Entry Number 98-04459, available on-line at: ``\texttt{http://www.darpa.mil/body/pdf/transition.pdf}''}, year = 1998, } @unpublished{Defense:01, author = {Department of Defense}, title = {{R}eport of the {S}ecretary of {D}efense to the {P}resident and the {C}ongress}, year = 2001, note = {GPO Item 0306-A-02 (MF). Entry Number 97-06367, available on-line at: ``\texttt{http://www.dtic.mil/execsec/adr2001/adr2001.pdf}''. Also known as the ``Defense Annual Report.'' See Chapter 1, page 1}, } @article{Dehmelt:88, author = {H. Dehmelt}, title = {New Continuous {S}tern-{Ge}rlach effect and a hint of 'the' elementary particle}, journal = {Zeitschrift f\"ur Physik D}, year = 1988, volume = 10, number = 2, pages = {127--34}, } @article{Dehmelt:90, author = {H. Dehmelt}, title = {Experiments with an isolated subatomic particle at rest}, journal = {Reviews of Modern Physics}, year = 1990, volume = 62, number = 3, pages = {525--30}, } @article{DeRisi:96, author = {J. DeRisi and L. Penland and P. O. Brown and M. L. Bittner and P. S. Meltzer and M. Ray and Y. Chen and Y. A. Su and J. M. Trent}, title = {Use of a cDNA microarray to analyse gene expression patterns in human cancer}, journal = {Nature Genetics}, volume = 14, pages = {457--60}, year = 1996, } @book{Deutsch:97, author = {D. Deutsch}, title = {The Fabric of Reality}, publisher = {Penguin Press}, year = 1997, pages = {315}, jasquote = {Knowledge does not come into existence fully formed. It exists only as the result of creative processes, which are step-by-step, evolutionary processes, always starting with a problem and proceeding with tentative new theories, criticism and the elimination of errors to a new and preferable problem-situation. This is how Shakespeare wrote his plays. It is how Einstein discovered his field equations. It is how all of us succeed in solving any problem, large or small, in our lives, or in creating anything of value.} } @article{Dewaal:84, author = {V. J. de Waal and P. Schrijner and R. Llurba}, title = {Simulation and optimization of a {DC SQUID} with finite capacitance}, journal = {Journal of Low Temperature Physics}, year = 1984, volume = 54, number = 3, pages = {215--32}, } @misc{Dirac:00, author = {P. A. M. Dirac}, note = {Attributed to Paul Dirac by Valentine Telegdi in a conversation with the proposer (J.A.S., then a student); University of Chicago, 1976. Similar Dirac quotes appear in \cite{Telegdi:89,Dirac:75}.}, } @inProceedings{Dirac:75, editor = {H. Hora and J. R. Shepanski}, booktitle = {Directions in Physics}, author = {P. A. M. Dirac}, title = {The Development of Quantum Mechanics}, chapter = 1, publisher = {Wiley-Interscience, New York}, year = 1978, pages = {6}, jasnote = {Lectures delivered during a 1975 visit to Australia and New Zealand. "[In the eary days of quantum mechanics\ldots ] It was a good description to say that it was a game, a very interesting game one could play. Whenever one solved one of the little problems, one could write a paper about it. It was very easy in those days for any second-rate physicist to do first-rate work. There has not been such a glorious time since. It is very difficult now for a first-rate physicist to do second-rate work."}, } @article{Dorofeyev:99, author = {I. Dorofeyev and H. Fuchs and G. Wenning and B. Gotsman}, title = {Brownian motion of microscopic solids under the action of fluctuating electromagnetic fields}, journal = {Physical Review Letters}, year = 1999, volume = 83, number = 12, pages = {2402--2405}, jasnote = {Quotes Rytov's book on thermal magnetic noise}, } @article{Dougherty:00, author = {W. M. Dougherty and K. J. Bruland and S. H. Chao and J. L. Garbini and S. E. Jensen and J. A. Sidles}, title = {The {B}loch equations in high-gradient magnetic resonance force microscopy: theory and experiment}, journal = {Journal of Magnetic Resonance}, volume = 143, year = 2000, pages = {106--119}, } @article{Dougherty:96, author = {W. M. Dougherty and K. J. Bruland and J. L. Garbini and J. A. Sidles}, title = {Detection of {AC} Magnetic Signals by Parametric Mode Coupling in a Mechanical Oscillator}, journal = {Measurement Science and Technology}, year = 1996, volume = 7, pages = {1733--39}, } @article{Dougherty:97, author = {W. M. Dougherty and K. J. Bruland and J. L. Garbini and W. M. Leath and J. A. Sidles}, title = {Sensitivity Calculations for Subcellular Spin Imaging by Magnetic Resonance Force Microscopy}, journal = {Cell Vision}, year = 1997, volume = 4, pages = {134--5}, } @article{Drake:89, author = {B. Drake and C. B. Prater and A. L. Weisenhorn and S. A. C. Gould and T. R. Albrecht and C. F. Quate and D. S. Cannell and H. G. Hansma and P. K. Hansma}, title = {Imaging crystal, polymers, and processes in water with the atomic force microscopy}, journal = {Science}, year = 1989, volume = 243, number = 4896, pages = {1586--9}, } @book{Drenth:94, author = {J. Drenth}, title = {Principles of protein X-ray crystallography}, publisher = {Springer-Verlag}, year = 1994, } @article{Driscoll:89a, author = {P. C. Driscoll and G. M. Clore and L. Beress and A. M. Gronenborn}, title = {A proton nuclear magnetic resonance study of the antihypertensive and antiviral protein {BDS-I} from the sea anemone Anemonia sulcata: sequential and stereospecific resonance assignment and secondary structure}, journal = {Biochemistry}, volume = {28(5)}, pages = {2178-97}, year = 1989, } @article{Driscoll:89b, author = {P. C. Driscoll and A. M. Gronenborn and L. Beress and G. M. Clore}, title = {Determination of the three-dimensional solution structure of the antihypertensive and antiviral protein {BDS-I} from the sea anemone Anemonia sulcata: a study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing}, journal = {Biochemistry}, volume = {28(5)}, pages = {2188-98}, year = 1989, } @article{Driscoll:90, author = {R. J. Driscoll and M. G. Youngquist and J. D. Baldeschwieler}, title = {Atomic scale imaging of {DNA} using scanning tunneling microscopy}, journal = {Nature}, year = 1990, volume = 346, number = 6281, pages = {294--6}, } @book{Eaton:91, author = {G. R. Eaton and S. S. Eaton and K. Ohno}, title = {EPR Imaging and In VivoEPR}, edition = {1st}, publisher = {CRC Press, Boca Raton}, year = 1991, note = {See page 294.}, } @inProceedings{Edstam:92, author = {J. Edstam and H. K. Olsson}, editor = {H. Koch and H. L\"ubbig}, title = {Superconducting Devices and Applications}, booktitle = {Springer Proceedings in Physics Vol.}, year = 1992, address = {Berlin}, publisher = {Springer}, pages = {224--7}, } @article{Engel:01, author = {H. A. Engel and P. Recher and D. Loss}, title = {Electron spins in quantum dots for spintronics and quantum computation}, journal = {Solid State Communications}, volume = 119, number = {4--5}, pages = {229--36}, year = 2001, } @ARTICLE{epr, author = "A. Einstein and B. Podolsky and N. Rosen", year = "1935", journal = "Phys.\ Rev.", volume = "47", pages = "777" } @book{Ferreirinho:91, author = {J. Ferreirinho}, title = {The Detection of Gravitational Waves}, publisher = {Cambridge Univ. Press, Cambridge}, year = 1991, } @article{Feynman:48, author = {R. P. Feynman}, title = {Space-Time approach to nonrelativistic quantum mechanics}, journal = {Reviews of Modern Physics}, volume = 20, year = 1948, pages = {367--387}, jasnote = {Section 3 gives the measurement amplitude formalism}, } @article{Feynman:59, author = {R. P. Feynman}, title = {There's plenty of room at the bottom}, journal = {Journal of Microelectromechanical Systems}, year = 1992, volume = 1, number = 1, pages = {60--66}, note = {Transcript of lecture given at the December 1959 American Physical Society annual meeting.}, jasnote = {I put this out as a challenge: Is there no way to make the electron microscope more powerful? [...] Make the microscope one hundred times more powerful, and many problems of biology would be made very much easier.}, } @book{Feynman:65, author = {R. P. Feynman}, title = {The Character of Physical Law}, edition = {paperback}, chapter = {Seeking New Laws}, publisher = {The M.I.T.~Press}, city = {Cambridge, Massachusetts}, year = 1965, pages = {172}, note = {Quoted from Lecture 7: \emph{Seeking New Laws}, page 172.}, jasnote = {Chapter 7, entitled "Seeking New Laws". "We are very lucky to live in an age in which we are still making discoveries. It is like the discovery of America---you only discover it once. The age in which we live is the one in which we are discovering the fundamental laws of nature, and that day will never come again. It is very exciting, it is marvelous, but this excitement will have to go. Of course, in the future there will be other interests. There will be the interest in the connection of one level of phenomena with another---phenomena in biology and so on, or, if you are talking about exploration, exploring other planets, but there will not still be the same things that we are doing now."}, } @article{Feynman:82, author = {R. P. Feynman}, title = {Simulating physics with computers}, journal = {International Journal of Theoretical Physics}, volume = 21, number = {6--7}, pages = {467--488}, year = 1982, } @article{Fink:99, author = {H-W Fink and C. Sch\"onenberger}, title = {Electrical conduction through {DNA} molecules}, journal = {Nature}, volume = 398, pages = {407--410}, year = 1999, } @article{Ford:88, author = {G. W. Ford and J. T. Lewis and R. F. O'Connell}, title = {Quantum {L}angevin equation}, journal = {Physical Review A}, volume = {37(11)}, pages = {4419--28}, year = 1988, jasnote = {See Section V for a discussion of quadratic terms}, } @article{Ford:88b, author = {G. W. Ford and J. T. Lewis and R. F. O'Connell}, title = {Independent oscillator model of a heat bath: exact diagonalization of the {H}amiltonian}, journal = {Journal of Statistical Physics}, volume = 53, pages = {439--455}, year = 1988, } @article{Ford:93, author = {X. L. Li and G. W. Ford and R. F. O'Connell}, title = {Energy balance for a dissipative system}, journal = {Physical Review E}, volume = 48, number = 2, pages = {1547--1549}, year = 1993, jasnote = {See also Senitzsky's critique \cite{Senitzky:95}.}, } @article{Ford:95, author = {X. L. Li and G. W. Ford and R. F. O'Connell}, title = {Reply to ``{C}omment on `{E}nergy balance for a dissipative system{'}\,''}, journal = {Physical Review E}, volume = 51, number = 5, pages = {5169--5171}, year = 1995, jasnote2 = {A reply to Senitzsky's critique \cite{Senitzky:95}.}, jasnote = {see Senitzky:95: ``This is a system wih an infinite number of degrees of freedom, each with its corresponding zero-point oscillation. At absolute zero, this system is in its ground state and, trivially, there is no work done on or by the system. But, for any finite coupling, \emph{no matter how weak}, $H_{\text{spin}}$ does not commute with $H$. Therefore, the ground state of $H$ is not the ground state of $H_{\text{spin}}$ and, even at absolute zero, the oscillator energy must fluctuate.'' equation (14) --- Q is the Q of the oscillator \begin{equation} \expect{H_\text{osc}} = \frac{\hbar \omega_0}{2} + \frac{\hbar\omega_0}{\pi Q} \ln(\omega_c/\omega_0) \end{equation}}, } @book{Fraser:68, author = {D. B. Fraser}, title = {Physical Acoustics Vol. V}, publisher = {Academic, New York}, year = 1968, } @article{Gadsby:96, author = {G. C. Gadsby}, title = {Two-bit anion channel really shapes up}, journal = {Nature}, year = 1996, volume = 383, pages = {295--6}, } @article{Garbini:96, author = {J. L. Garbini and K. J. Bruland and W. M. Dougherty and J. A. Sidles}, title = {Optimal control of force microscope cantilevers. {I}. {C}ontroller Design}, journal = {Journal of Applied Physics}, year = 1996, volume = 80, number = 4, pages = {1951--8}, jasnote = {All MRFM cantilevers are subject to thermal excitation (Brownian Motion) which, if uncontrolled, can be of sufficient amplitude to substantially degrade device sensitivity, or even prevent signal detection altogether. This article describes the theoretical principles and performance of optimal cantilever motion control. As noted in the article: ``The method accounts for inherent noise processes and proactical application of control forces. We show that active feedback control improves cantilever motional stability, enabling instrument designs of much higher sensitivity and faster imaging than passive designs.'' The word `optimal' in the title of this article is appropriate in a mathematically strict sense: for any specified control force, the formalism yields a controller design which optimally stabilizes the cantilever against thermal excitation. This article is the theortical companion to \cite{Bruland:96}}, } @book{Gardiner:00, author = {C. W. Gardiner and P. Zoller}, title = {Quantum Noise}, publisher = {Springer}, edition = {2nd}, year = 2000, jasnote = {See Chapter 8 for photon counting rates, esp 8.2.4-5. "The formula 8.2.5 when evaluated in time-dependent perturbation theory is an average over times much longer than the period of an optical cycle ... There are considerable technical problems with any treatment which does not make use of this approximation." See entry for Lloyd quant-ph/0103006. His equation 3 = Gardiner's equation 8.2.5. Also, see the result for thermal noise P-function, 4.4.48. }, } @book{Gardiner:85, author = {C. W. Gardiner}, title = {Handbook of Stochastic Processes}, publisher = {Springer}, edition = {2nd}, year = 1985, jasnote = {See Ito's formula, equation 4.3.14}, } @book{GardinerWave:00, author = {C. W. Gardiner and P. Zoller}, title = {Quantum Noise}, publisher = {Springer}, edition = {2nd}, year = 2000, note = {see Section 11.3.9}, jasnote = {Wave function simulation reference}, } @article{Genack:73, author = {A. Z. Genack and A. G. Redfield}, title = {Nuclear spin diffusion and its thermodynamic quenching in the field gradients of a type-II superconductor}, journal = {Physical Review Letters}, volume = 31, number = 19, pages = {1204--7}, year = 1973, jasnote = {See also Science magazine article by Redfield, excellent for spin thermodynamics}, } @inCollection{Gilchrist:01, author = {G. W. Gilchrist and J. G. Kingsolver}, title = {Is optimality over the hill? The fitness landscapes of idealized organisms}, booktitle = {Adaptationism and Optimality}, editor = {S. H. Orzack and E. Sober}, publisher = {Cambridge University Press}, pages = {24--44}, year = 2001, jasnote = {Use of historical metaphors in evolutionary theory. See Baum:01, Gilchrist:01,Orzack:01. Natural selection as historical action: "[The] historical view challenges us to decipher the causes of the fixation of a particular state in a particular ancestral lineage." }, } @article{Gould:90, author = {S. A. C. Gould and B. Drake and C. B. Prater and A. L. Weisenhorn and S.Manne and G. L. Kelderman and H. J. Butt and H. Hansma and P. K. Hansma and S. Magonov and H. J. Cantow}, title = {The atomic force microscope: a tool for science and industry.}, journal = {Ultramicroscopy}, year = 1990, volume = 33, number = 2, pages = {93--8}, } @book{Granato:66, author = {A. V.Granato and K. Lucke}, title = {Physical Acoustics Vol. !!! Check!!! IVA}, publisher = {Academic, New York}, year = 1966, } @book{Grandy:00, author = {W. T. Grandy}, title = {Scattering of Waves from Large Spheres}, publisher = {Cambridge University Press}, year = 2000, jasnote = {Good discussion of microsphere resonances, with references ... see Sections 7.6-7.6}, } @book{Guerlac:87, author = {H. E. Guerlac}, title = {Radar in World War {I}{I}}, volume = {I}, page = {69}, chapter = 4, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, jasnote = {It is much too easy, now that we are all fully aware of the immense military value of radar, to assume that its revolutionary significance must have been fully grasped at the beginning, and that the development of a device with such potentialities must have fired the imagination of all persons to whom the idea was disclosed. This was far from being the case. It is an important fact that during the early phases of its development [...] radar encountered a great deal of skepticism not only in the Bureaus, where in certain quarters it amounted to outright antagonism [which] did not evaporate until the feasibility of the equipment had been demonstrated beyond a doubt.}, } @book{Guerlac:87bothV, author = {H. E. Guerlac}, title = {Radar in World War {I}{I}}, volume = {(two volumes)}, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, note = {Julian Schwinger's work is discussed in Volume I (consult index).}, } @book{Guerlac:87b, author = {H. E. Guerlac}, title = {Radar in World War II}, volume = {I}, chapter = 3, page = {27}, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, jasnote = {Radio detection devices using the pulse-echo principle were developed independently and almost simultaneously during the 1930's and 1940's by a majority of the great powers. In 1939 closely guarded secret programs were in various stages of development in Great Britain, France, Germany, Canada, and the United States. Russia, China, Japan, and Italy were at that time without the equipment, and seem to have acquired it after the outbreak of war, by capture and by disclosures from their allies.}, } @inBook{Guerlac:87c, author = {H. E. Guerlac}, title = {Radar in World War II}, volume = {I}, chapter = 3, page = {27--28}, publisher = {Tomash Publishers, American Institute of Physics}, year = 1987, note = {See pages 27--28.}, jasnote = {"Such a duplication of effort will surprise only those who cling to a hero theory of scientific progress, and demand for each discovery or development a single putative inventor; or those who are unaware of the frequency---one is tempted to write, the regularity---with which such parallelisms are encountered in modern scientific work." "Clearly, such a striking instance of parallel and independent discovery raises a number of fundamental historical questions. When a real burgeoning takes place we are led to ask what were the conditions which favored it. The main lines of inquiry are obvious. First of all, when a serious effort is put behind a given development, as it was in the case of radar, it is evident that it satisfied a clear and urgent need. Second, since the principle \emph{nihil ex nihilo} applies quite as surely to the history of science as to biology, it is obvious that some key features or central ideas in pure science must have been the point of departure. Lastly, when success is attained, it is obvious that the state of the art, that is, the perfection of engineering skills in this or neighboring fields, must have reached a point where success was fairly well assured."}, } @article{Hacia:96, author = {J. G. Hacia and L. C. Brody and M. S. Chee and S. P. A. Fodor and F. S. Collins}, title = {Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis}, journal = {Nature Genetics}, volume = 14, pages = {441--447}, year = 1996, } @article{Hammel:95, author = {P. C. Hammel and Z. Zhang and G. J. Moore and M. L. Roukes}, title = {Sub-surface imaging with the magnetic resonance force microscope}, journal = {Journal of Low Temperature Physics}, year = 1995, volume = 101, number = 1, pages = {59--69}, jasnote = {This article marks the appearance in print of the third group to independently perform an MRFM experiment, under the auspices of Los Alamos National Laboratory.}, } @article{Hannay:00, author = {J. D. Hannay and R. W. Chantrell and D. Rugar}, title = {Thernal field fluctuations in a magnetic tip: implications for magnetic resonance force microscopy}, journal = {Journal of Applied Physics}, volume = 87, number = 9, year = 2000, pages = {6827--6829}, } @article{Hansma:91, author = {H. G. Hansma and A. L. Weisenhorn and S. A. C. Gould and R. L. Sinsheimer and H. E. Gaub and G. D. Stucky and C. M. Zaremba and P. K. Hansma}, title = {Progress in sequencing deoxyribonucleic acid with an atomic force microscope.}, journal = {Journal of Vacuum Science and Technology B}, year = 1991, volume = 9, number = 2, pages = {1282--4}, } @article{Hansma:93, author = {H. G. Hansma and R. L. Sinsheimer and J. Groppe and T. C. Bruice and V. Elings and G. Gurley and M. Bezanilla and I. A. Mastrangelo and P. V. C. Hough and P. K. Hansma}, title = {Recent advances in atomic force microscopy of {DNA}}, journal = {Scanning}, year = 1993, volume = 15, number = 5, pages = {296--9}, } @article{Harris, author = {C. C. Harris}, title = {p53: At the Crossroads of Molecular Carcinogenesis and Risk Assessment}, journal = {Science}, year = 1993, volume = 262, number = 5142, pages = {1980--2}, } @article{Heisz:87, author = {S. Heisz and G. Hilscer}, title = {The origin of graduated demagnetization curves of {Nd-Fe-B} magnets}, journal = {Journal of Magnetic Materials}, volume = 67, pages = {20-28}, year = 1987, } @article{Henderson:95, author = {R. Henderson}, title = {The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules}, journal = {Quarterly Reviews of Biophysics}, volume = 28, number = 2, pages = {171--193}, year = 1995, jasnotes = {Why were von NeumannÕs and FeynmanÕs hopes not realized? In a 1995 review [3], Henderson concludes that direct molecular observation is unachievable by neutron, electron, or x-ray microscopy because "radiation damage [...] prevents the determination of the structure of a single biological macromolecule at atomic resolution using any kind of microscopy. This is true whether neutrons, electrons, or x-rays are used as the illumination." His analysis encompasses all microscopies that were known in von NeumannÕs and FeynmanÕs day, as well as their modern variants like x-ray and electron holography. It seems ironic that a mundane problem like specimen damage should prove so intractable. Von Neumann and Feynman envisioned that the main challenge would lie in achieving finely focussed beams. But as a number of recent reviews have concluded, the fundamental obstacle is instead the anti-MooreÕs Law scaling of radiation damage: the smaller the object being observed, the more likely it is to be damaged by neutrons, electrons, or x-rays.}, } @misc{Hersh:02, author = {R. Hersh}, journal = {Mathematical Intelligencer}, pages = {74}, howpublished = {Review of \emph{The Math Gene: How Mathematical Numbers Evolved and Why Numbers Are Like Gossip}}, volume = 24, number = 1, year = 2002, jasnote = {We math teachers have accepted the embarrassing, shameful role of ``gate-keepers.'' We're custodians of a narrow opening, through which sqeeze aspirants to the ``degrees'' that are the \emph{sine qua non} of respectability and affluence. ``It's a dirty job, but somebody has to do it.'' It keeps us supported by state legislatures.\\ This seldom-acknowledged reality contradicts the role some, at least, would rather play---to provide more students intellectual challenge and pleasure that they could have enjoyed, and will never know they missed.}, } @article{Hobbs:89, author = {P. Hobbs and D. Abraham and H. Wickramasinghe}, title = {Magnetic force microscopy with 25 nm resolution}, journal = {Applied Physics Letters}, year = 1989, volume = 55, number = 22, pages = {2357--9}, } @article{Hocherl:64, author = {G. H\"ocherl and H. C. Wolf}, title = {Zur konzentrationsabh\"angigkeit der elektronspin-relaxationszeiten von diphenyl-picryl-hydrazyl in fester phase}, journal = {Zeitschrift fur Physik}, volume = 183, pages = {341-351}, year = 1964, } @book{Hoen:94, author = {S. Hoen and O. Z\"uger and C. S. Yannoni and H. J. Mamin and K. Wago and D. Rugar}, title = {Technical Digest of the 1994 Solid State Sensor and Actuator Workshop, Hilton Head, SC}, publisher = {Transducers Research Foundation}, year = 1994, jasnote = {This conference proceedings publication has turned out to be one of the most significant in the history of MRFM. It is a well-established design principle in MRFM \cite{Sidles:95} that the force noise spectral density $S_f$ is given by $S_f = 2 k_B T m/\tau$, where $T$ is the ambient temperature, $k_B$ is Booltzman's constant, $\tau$ is the damping time of the cantilever, and $m$ is the cantilever motional mass. Thus low cantilever mass $m$ is associated with lower noise levels and greater sensitivity. The great design insight of this article is that by far the easiest cantilever dimension to make small, and thus achieve low motional mass, is not the length or width of the cantilever, but rather the thickness, which is under evaporative control. Hoen \emph{et al.} demonstrate that $SiN$ cantilevers of thickness $\sim 400 \AA$ are suitable for MRFM experiments.}, } @book{Home:99, author = {D. Home}, title = {Conceptual Foundations of Quantum Physics: An Overview from Modern Perspectives}, publisher = {Plenum Press}, year = 1999, city = {New York and London}, jasnote = {Good discussion of various perspectives}, } @book{Hooke:1667a, author = {R. Hooke}, title = {Micrographia: or some Physiological Descriptions of Minute Bodies made by Magnifying Glasses with Observations and Inquiries Thereupon}, publisher = {Royal Society of London}, year = 1667, note = {All quotes are from {H}ooke's {P}reface (pages not numbered in the original).}, jasnote = {``The like frailties are to be found in Memory; we often let many things slip away from us, which deserve to be retain'd; and of those which we treasure up, a great part is either frivolous or false; and if good, and substantial, either in tract of time obliterated, or at best to be overwhelmed and buried under more frothy notions, that when there is need of them, they are in vain fought over.''}, } @book{Hooke:1667b, author = {R. Hooke}, title = {Micrographia: or some Physiological Descriptions of Minute Bodies made by Magnifying Glasses with Observations and Inquiries Thereupon}, publisher = {Royal Society of London}, year = 1667, note = {All quotes are from {H}ooke's {P}reface (pages not numbered in the original).}, jasnote = {``By the means of Telescopes, there is nothing so far distant but may be represented to our view; and by the help of microscopes, there is nothing so small, as to escape our inquiry; hence there is a new visible world discovered to the understanding. {\ldots} It seems not improbable, but that by these helps the subtilty of the composition of Bodies, the structure of their parts, the instruments and manner of their inward motions, and all the other possible appearances of things, may come to be more fully discovered [and] we may perhaps be inabled to discern all the secret workings of Nature, almost in the same manner as we do those that are the productions of Art, and are manag'd by Wheels, and Engines, and Springs, that were devised by humane Wit. ''}, } @book{Hooke:1667c, author = {R. Hooke}, title = {Micrographia: or some Physiological Descriptions of Minute Bodies made by Magnifying Glasses with Observations and Inquiries Thereupon}, publisher = {Royal Society of London}, year = 1667, note = {All quotes are from {H}ooke's {P}reface (pages not numbered in the original).}, jasnote = {``The Indeavors of Skilful men have been most conversant about the assistance of the Eye, and many noble Productions have followed upon it; and from hence we may conclude, that there is a way open'd for advancing the operations, not only of all the other Senses, but even of the Eye it self; that which has already been done ought not to content us, but rather to incourage us to proceed further, and to attempt greater things in the same and different wayes. 'Tis not unlikely, but that there may yet be invented several other helps for the eye, as much exceeding those already found, as those do the bare eye, such as by which we may perhaps be able to discover living Creatures in the Moon, or other Planets, the figures of the compounding particles of matter, and the particular Schematicisms and Textures of Bodies.''}, } @article{Hug:99, author = {H.J. Hug and B. Stiefel and P.J.A. van Schendel and A. Moser and S. Martin and H.-J. Guntherodt}, title = {A low temperature ultrahigh vacuum scanning force microscope}, journal = {Review of Scientific Instruments}, volume = 70, number = 9, pages = {3525-40}, year = 2001, } @article{Hutter:93, author = {J. L. Hutter and J. Bechhoefer}, title = {Calibr