Bioinformatics links

Jon Jacky, Nov 2004


GenBank
http://www.ncbi.nlm.nih.gov/Genbank/genbankstats.html
ftp://ftp.ncbi.nih.gov/genbank/gbrel.txt

Protein Data Bank (PDB) home, current holdings, structural genomics
http://www.rcsb.org/pdb/index.html
http://www.rcsb.org/pdb/holdings.html
http://www.rcsb.org/pdb/holdings_table.html
http://www.rcsb.org/pdb/strucgen.html

Papers about PDB
http://nar.oupjournals.org/cgi/content/full/28/1/235
http://www.rcsb.org/pdb/info.html#Press_Releases
http://journals.iucr.org/d/issues/2002/06/01/an0594/index.html
http://journals.iucr.org/d/issues/2002/06/01/an0612/index.html

PDB file format, contents, instructions, samples, statistics
http://cnx.rice.edu/content/m10997/latest/
http://www.usm.maine.edu/~rhodes/0Help/PDBContent.html
http://www.fhcrc.org/labs/ferre/coordinates.html
http://mirrors.rcsb.org/cgi-bin/SMS/pdb_mining_2/pdb_mining_2.cgi
http://www.daylight.com/meetings/mug01/Sayle/m4xbondage.html
http://www.bio-mirror.net/biomirror/docs/about-databanks.html

Protein molecular weight, sequence length (number of residues), number of atoms
http://www-biol.paisley.ac.uk/courses/stfunmac/glossary/peptides.html
http://www.ccp4.ac.uk/dist/html/matthews_coef.html
http://www.sacs.ucsf.edu/Documentation/emboss/pepstats.html

SGPP, Structural Genomics of Pathogenic Protozoa
http://www.sgpp.org/

PSI, Protein Structure Initiative, supports SGPP
http://www.structuralgenomics.org/

Structural genomics initiatives
http://www.nigms.nih.gov/funding/psi/psi_research_centers.html

Joint Center for Structural Genomics, with target scoreboard
http://www.jcsg.org/

p53, Molecule of the Year
http://www.hhmi.org/annual95/b140.html

"Human gene number slashed"
http://news.bbc.co.uk/1/hi/sci/tech/3760766.stm

Human Proteomics Initiative
http://us.expasy.org/sprot/hpi/hpi_desc.html

Rational approaches to AIDS drug design through structural biology
http://arjournals.annualreviews.org/doi/full/10.1146/annurev.med.53.052901.131947

Google mission statement
http://www.google.com/corporate/index.html