PubMed Entrez BLAST OMIM Taxonomy Structure

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Genomic: gi|1006832|gb|U35064.1|OTU35064 Oncorhynchus tschawytscha heat shock protein 70 (HSP70) mRNA, complete cds
mRNA: gi|45752213|emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in linkage group 3
Alignment is on plus strand of genomic sequence and on plus strand of mRNA sequence
mRNA coverage: 1%
Overall percent identity: 85.2%
68 1856

EXON Genomic coordinates mRNA coordinates length identity mismatches gaps Donor site Acc. site
Exon 1 68-1756 5210-6898 1689 85.0% 254 0
Exon 2 1788-1856 6930-6998 69 89.9% 7 0

 

 

Exon 1: 68-1756 (genomic); 5210-6898 (mRNA)

68          AAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGG
                      |||| |||||||||||||||||||||||||||||||||||
5210                  CTATTGGCATTGACCTGGGCACCACCTACTCCTGTGTGGG

108         GGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACA
            |||||| |||||||| ||||||||||||||||||||||||||||||||||
5250        GGTGTTTCAGCATGGAAAAGTGGAGATCATCGCCAACGACCAGGGCAACA

158         GGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTCATCGGA
            | || |||||||||||||| |||||||||||||| ||||| || || |||
5300        GAACAACACCCAGCTATGTTGCCTTCACAGACACAGAGAGGCTGATTGGA

208         GACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGA
            |||||||| |||||||||||||||||||| ||||||||||| || |||||
5350        GACGCAGCTAAGAACCAGGTGGCCATGAATCCCAACAACACGGTGTTCGA

258         CGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCG
             |||||  | ||||| ||| | | |||| | || |  || |||||  | |
5400        TGCCAAGAGGCTGATCGGCAGGAGGTTCGATGACCCTGTAGTGCAGTCTG

308         ACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAA
            |||||||||||||| ||||||| || ||||| || ||||||||||| |||
5450        ACATGAAGCACTGGTCCTTCAAAGTCGTCAGTGATGGAGGAAAGCCAAAA

358         GTTCAGGTCGATTACAAAGGTGAGAACAAATCCTTCAACCCAGAGGAGAT
            |||   || ||  ||||||| || |||||  |||| || || || |||||
5500        GTTGCAGTGGAACACAAAGGAGAAAACAAGACCTTTAATCCTGAAGAGAT

408         CTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGG
             ||||||||||||||||||||||||| |||||| || |||||||| ||||
5550        TTCCTCCATGGTCCTGGTGAAGATGAAGGAGATTGCAGAGGCTTATCTGG

458         GCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGAT
            | ||||||||| |||| ||||| |||||||| || ||||| |||||||| 
5600        GGCAGAAGGTGACCAACGCAGTTATCACAGTTCCAGCCTATTTCAACGAC

508         TCACAGAGACAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGT
            || ||||||||||||||||| || |||||||| |||||||| ||||| ||
5650        TCCCAGAGACAGGCCACTAAAGATGCTGGAGTCATCGCTGGACTGAACGT

558         GCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGG
            |||  | |||||||| ||||||||||| |||||||||||||||||| |||
5700        GCTCCGCATCATCAATGAGCCCACGGCTGCAGCCATCGCCTACGGCCTGG

608         ACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGG
            |||||||||  |||   || |||||||| ||||| ||||||||||| || 
5750        ACAAAGGCAAATCCTCAGAGCGCAACGTGCTGATCTTTGACCTGGGCGGA

658         GGCACCTTTGACGTCTCCATCCTGACCATCGAGGATGGGATCTTTGAGGT
            |||||||| ||||| || |||||||||||||| || || |||||||||||
5800        GGCACCTTCGACGTGTCTATCCTGACCATCGAAGACGGCATCTTTGAGGT

708         GAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACC
            ||||||||| |||||||||||||| |||||||| ||||||||||||||||
5850        GAAGGCCACCGCTGGAGACACTCATCTGGGCGGTGAGGACTTTGACAACC

758         GCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGAC
            || |||| |  ||||||||||| |||||||||||||| ||||||||||||
5900        GCATGGTGAACCACTTTGTGGAAGAGTTCAAGAGGAAGCACAAGAAGGAC

808         ATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAG
            ||||| ||||||||| |||| |||||||| ||| | || || |||||  |
5950        ATCAGTCAGAACAAGAGGGCCCTGAGGAGACTGCGAACCGCATGCGAACG

858         GGCCAAGAGAACACTGTCTTCCAGCTCCCAGGCCAGCATTGAGATTGACT
             |||||||| || || || |||||||| ||||||||||||||||| ||||
6000        AGCCAAGAGGACGCTCTCGTCCAGCTCTCAGGCCAGCATTGAGATCGACT

908         CTCTTTTTGAGGGCATTGACTTCTACACCTCCATCACCAGGGCTCGTTTT
            |||| |  |||||||| ||||||||||| ||||||||||| ||||| || 
6050        CTCTGTACGAGGGCATCGACTTCTACACGTCCATCACCAGAGCTCGCTTC

958         GAGGAGATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAA
            |||||| | || |||||||||||||||||||| || || |||||||||||
6100        GAGGAGCTCTGCTCCGACCTCTTCAGGGGAACGCTTGATCCTGTGGAGAA

1008        AGCCCTCAGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCC
            ||| || ||||| ||||||||||||||||| || || |||||| |||| |
6150        AGCACTGAGGGACGCCAAGATGGACAAGGCTCAGATCCACGACATCGTGC

1058        TAGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGAC
            | || || || || ||  | ||||| ||| |||||||||| |||||||| 
6200        TGGTTGGGGGATCAACAAGAATCCCAAAGATCCAGAAGCTTCTGCAGGAT

1108        TTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGT
            || ||||||||| |||| || ||||||||||| ||||| || || |||||
6250        TTCTTCAACGGCAGAGAACTGAACAAGAGCATTAACCCTGATGAAGCGGT

1158        GGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTG
            ||| ||||| || ||  | ||||| |||||| |    |||||||  ||||
6300        GGCTTACGGTGCCGCGGTGCAGGCCGCCATCCTCATGGGCGACACCTCTG

1208        AGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGC
              ||||| |||||||||||||||||||| ||||| || ||||| ||||| 
6350        GAAACGTGCAGGACCTGCTGCTGCTGGACGTGGCCCCACTGTCTCTGGGT

1258        ATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACGCAACACCAC
            || || ||||| || || |||||||| ||||| ||||| |||||||| ||
6400        ATTGAGACCGCAGGTGGAGTCATGACGGCCCTCATCAAGCGCAACACAAC

1308        CATCCCATCCAAACAGACCCAGACCTTCACAACTTACTCCGACAACCAGC
             |||||  |||||||||||||||||||||| || ||||||||||||||||
6450        TATCCCCACCAAACAGACCCAGACCTTCACCACCTACTCCGACAACCAGC

1358        CCGGGGTCATGATCCAGGTCTACGAGGGAGAGAGAGCCATGACCAAGGAC
            |||| ||| |||||||||| | ||||||||| |||||||||||||| |||
6500        CCGGCGTCCTGATCCAGGTGTTCGAGGGAGAAAGAGCCATGACCAAAGAC

1408        AACAACCTCCTGGGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACG
            |||||||| ||||| || ||||||||  | || || || ||||| |||||
6550        AACAACCTGCTGGGCAAATTTGAGCTGACGGGAATTCCACCTGCGCCACG

1458        AGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAACGGCATTC
             || ||||| |||||||| |||||||| ||||||||||||||||| || |
6600        TGGCGTCCCGCAGATCGAAGTGACCTTCGACATCGACGCCAACGGGATCC

1508        TGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACC
            | || || || |||| |||||| ||||| || ||| ||||||||||||||
6650        TAAATGTGTCGGCGGCGGACAAAAGCACCGGAAAACAGAACAAGATCACC

1558        ATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGT
            |||||||||||||||||| |||| ||||||||||| || ||||| |||||
6700        ATCACCAACGACAAGGGCAGGCTGAGCAAAGAGGAGATCGAGAGAATGGT

1608        GCAGGACGCTGACAAATACAAAGCTGAGGATGACGCACAGAGGGAGAAGA
            |||||| || ||||| ||||||||||| || ||    ||||| |||||||
6750        GCAGGAGGCCGACAAGTACAAAGCTGAAGACGATCTGCAGAGAGAGAAGA

1658        TAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGC
            |  ||||||| |||||||||||||| ||||||||||| ||||||| ||| 
6800        TTTCTGCCAAAAACTCCCTGGAGTCTTACGCCTTCAACATGAAGAACAGT

1708        GTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAA
            ||||| ||||||||| ||||||||||||||||| |||||||||| ||||
6850        GTGGAAGACGACAACCTGAAAGGCAAGATCAGCGAGGAGGACAAGAAGA

            AGTGGTGGA

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Exon 2: 1788-1856 (genomic); 6930-6998 (mRNA)

1788        AGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTAT
                      |||| ||||||||||||||||||  || ||||||||||| 
6930                  CTGGCTGGAGAACAACCAGCTGGCGGATAAAGAGGAGTAC

1828        GAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCT
            || |||||||| |||||||||||||||||
6970        GAACATCAGCTGAAGGAGCTGGAGAAAGT

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