Multiple sequence alignment
Results from Geneious
of Chinook salmon hsp70 mRNA compared to the four species below:
Guppy |
Killifish |
Rainbow trout |
Zebrafish |
|
Length |
2,369 |
2,512 |
2,190 |
2,304 |
Sequences |
2 |
2 |
2 |
2 |
Pairwise % similarity |
59% |
71% |
96% |
76% |
Identical sites |
1395 |
1795 |
2105 |
1745 |
A |
1,190 (25.1%) (27.6%) |
1,256 (25.0%) (27.1%) |
1,225 (28.0%) (28.4%) |
1,277 (27.7%) (28.9%) |
C |
1,112 (23.5%) (25.8%) |
1,222 (24.3%) (26.4%) |
1,131 (25.8%) (26.2%) |
1,121 (24.3%) (25.4%) |
G |
1,183 (25.0%) (27.5%) |
1,308 (26.0%) (28.3%) |
1,166 (26.6%) (27.0%) |
1,178 (25.6%) (26.6%) |
T |
819 (17.3%) (19.0%) |
842 (16.8%) (18.2%) |
790 (18.0%) (18.3%) |
845 (18.3%) (19.1%) |
- |
434 (9.2%) |
396 (7.9%) |
58 (1.6%) |
187 (4.1%) |
GC |
2,295 (53.3%) |
2,530 (54.7%) |
2,297 (53.3%) |
2,299 (52.0%) |
